Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 120 7e-22 seq6 118 2e-21 seq4 107 4e-18 seq8 84.2 5e-11 >seq5 Length=24206129 Score = 120 bits (132), Expect = 7e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| ||||| || |||||||| || ||||||| || || | || || || || || Sbjct 19881267 TGTAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGC 19881208 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || ||||| || || || || || || || |||||||| ||||| Sbjct 19881207 TTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTC 19881148 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || || || | ||| || || | || ||||| || ||||||||||| ||||| Sbjct 19881147 GCCTTCACGTTGTCGATGGTGTCTG-AGCTCTCAACCTCCAGGGTAATAGTCTTGCCAGT 19881089 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 19881088 GAGAGTCTTGACGAAAATCTGCATT 19881064 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || ||| | || ||||| || | ||||| || ||||| ||||| |||||| Sbjct 7376665 ATTCCACCCCTGAGCTTGAGCACTAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCA 7376724 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||||| | || | || || || || || || | ||| || || | Sbjct 7376725 GCCAGGGTGCGTCCGTCCTTGAGCTACTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGCG 7376784 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | ||||| || || Sbjct 7376785 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCG 7376844 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| || || || || || ||||| |||||||| Sbjct 7376845 ACCTCAAGCGTAATGGTCTTTCCGGTTAGGGTCTTGACAAAAATCTGCAT 7376894 Score = 96.9 bits (106), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | ||| || || || | || || ||||||||||| || || || Sbjct 7377123 ATTCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCT 7377182 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||||| || ||||| || || ||||| || || | ||| || | ||| Sbjct 7377183 GCGAGGGTGCGTCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTTAGGT 7377242 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | || || | || Sbjct 7377243 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGACTCA 7377302 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| | || || || ||||| ||||| || ||||| |||||||| Sbjct 7377303 ACC-------TTATGGTATTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 7377345 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 || || || || || || ||||| || || || | | || || | || || || || Sbjct 7376461 AGGTGCAAGGTGGACTCCTTCTGGATGTTGTAACCTGCTAAGGTGCGGCCATCCTCGAGC 7376520 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||||||| || || | ||| ||||| || || || || || || ||||||||| Sbjct 7376521 TGCTTGCCAGCAAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATC 7376580 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 |||||||| || || || | || || | || ||||| | ||||| || || || Sbjct 7376581 TTTGCTTTCACGTTGTCAATTGTGTCCGACGACTCAACCTCCAAGGTAATGGTTTTGCCG 7376640 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 || | ||| || ||||| || |||||| Sbjct 7376641 GTCAATGTCTTGACAAAGATTTGCATT 7376667 Score = 84.2 bits (92), Expect = 5e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || |||||||| || || || | || || ||||||||||| || ||||| Sbjct 7376893 ATGCCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCC 7376952 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAAT-TAGCCTCTGTTGATCAGG 104448 | | || | ||| || || || || || ||||| || || || | || || ||| | Sbjct 7376953 GCCAAGGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAAGACGATGCTGGTCAAG 7377012 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || || || |||||||| |||||||| || || || || | || || | || Sbjct 7377013 GGGGATACCCTCCTTATCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCTGAGGACTC 7377072 Query 104509 TACCTCTAGTGTAAT-AGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | || || ||||| | || | || || ||||| ||||||||| Sbjct 7377073 AACCTCCAAAGTGATGGGTCTTTCTTGTCAAGGTCTTCACAAAGATCTGCATT 7377125 >seq6 Length=25711811 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || || || | || || || ||||| || || || || Sbjct 22963999 ATGCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCC 22964058 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || |||||||| || |||||||| || || | || || ||||| Sbjct 22964059 GCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGT 22964118 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | ||||| | || Sbjct 22964119 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATTGTATCAGAGGACTCA 22964178 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| ||||| || ||||| |||||||| Sbjct 22964179 ACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 22964228 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || |||||||| || || |||| || || | || || Sbjct 22963789 AGCACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGTCCATCC 22963848 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || || | ||| || || || || ||||| || || ||| Sbjct 22963849 TCGAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 22963908 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGT 104526 |||||||| || || ||||| || | | || | ||| || ||||| || || || || Sbjct 22963909 TGAATCTTCGCCTTCACATTGTCGATCTTGTC-CGAGGACTCGACCTCAAGAGTGATGGT 22963967 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || || ||||| |||||||| Sbjct 22963968 CTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 22964000 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || ||||||||||| || || |||| Sbjct 21709541 TTCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAG 21709482 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || || | || ||||| ||||| || || || ||||| ||||| || || || || | Sbjct 21709481 CTAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGG 21709422 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || ||||| ||||||| Sbjct 21709421 GAATACCCTCTTTGTCCTGAA 21709401 >seq4 Length=27574323 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || ||||| || ||||| || | ||||| | || || Sbjct 24792403 AGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCC 24792344 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | || || || ||||| || || || || ||| Sbjct 24792343 TCAAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCC 24792284 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | |||||| | || ||||| | || || ||| Sbjct 24792283 TGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTC 24792224 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || ||||||||||| Sbjct 24792223 TTGCCAGTGAGGGTCTTAACGAATATCTGCAT 24792192 >seq8 Length=22678724 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/220 (68%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || ||||||||||| || ||||||| || | | || || Sbjct 3985226 AGGACAAGATGGAGGGTGGACTCTTTCTGAATTTTGTAGTCAGCAAGGTTGCGTCCTTCC 3985285 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| || || ||||| || || || || ||| Sbjct 3985286 TCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 3985345 Query 104468 TGAATCTTTGC--------TTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTG 104519 || |||||| | || ||||| || | ||| ||| | || ||||| || | Sbjct 3985346 TGGATCTTTACCTTCACTGCTTCACATTGTCGATGGTGTCGGATGACTCCACCTCGAGGG 3985405 Query 104520 TAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || | ||| || || || || || ||||| |||||||| Sbjct 3985406 TGATGGACTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 3985445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398222972496