Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8 95.1 1e-14 seq5 95.1 1e-14 seq2 95.1 1e-14 seq6 86.0 5e-12 seq1 82.4 6e-11 >seq8 Length=22678724 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||| || ||||| ||||| ||||| | | || | ||||| ||||| Sbjct 3985234 ATGGAGGGTGGACTCTTTCTGAATTTTGTAGTCAGCAAGGTTGCGTCCTTCCTCGAGCTG 3985293 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || | |||||||| ||| || | | ||||||||| || || Sbjct 3985294 CTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 3985353 Query 48643 --------CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 |||||| | | | ||||| |||| |||||| ||||| || |||| Sbjct 3985354 TACCTTCACTGCTTCACATTGTCGATGGTGTCGGATGACTCCACCTCGAGGGTGATGGAC 3985413 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| ||||| |||||||| ||||||||| Sbjct 3985414 TTGCCGGTCAGAGTCTTCACAAAGATCTGCATC 3985446 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/222 (70%), Gaps = 9/222 (4%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| ||||||||||| |||| ||| || || | ||||| |||||||| ||| | Sbjct 3995728 CTCCTTCTGAATGTTGTAGTCAG-CAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCAA 3995786 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| ||| || | | ||||| ||| || ||| ||| | | Sbjct 3995787 AGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACAT 3995846 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| |||| |||||| ||| | || |||| || ||||| || ||||||| Sbjct 3995847 TGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCA 3995906 Query 48714 CAAAAATCTGCATCGTGTCTTGATCGAAGA-AAGAGTGATGT 48754 |||| ||||||||| |||| |||| || |||||||| Sbjct 3995907 CAAAGATCTGCATC------TGATGAAAGATAACAGTGATGT 3995942 >seq5 Length=24206129 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||||| ||||| || |||||| || || ||||| ||||||| || |||||| Sbjct 7376685 CACTAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCCTT 7376744 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||| ||| ||| || | || | |||||||| ||| | || | | ||||||||| Sbjct 7376745 GAGCTACTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGCGGGGATGCCCTCCTTGTCCTG 7376804 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| ||| ||| | | | || ||||| | |||||| ||| | || ||||| || Sbjct 7376805 AATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAATGGTCTT 7376864 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || |||||||||||||| Sbjct 7376865 TCCGGTTAGGGTCTTGACAAAAATCTGCAT 7376894 >seq2 Length=31686972 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 || || ||| |||||| || |||||||| ||||| || ||| || | |||||||||| Sbjct 3056814 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTC-CTGCCATCCTCCAGCT 3056871 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || | ||||||||| ||| || | | ||||||||| || | Sbjct 3056872 GCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCT 3056931 Query 48642 TCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699 | ||||| | | || ||||| || | ||||||| ||| | || || || || || Sbjct 3056932 TGGCCTTGACGTTGTCG--ATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCC 3056989 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| ||||| || ||||| ||||||||| Sbjct 3056990 GGTCAGAGTCTTGACAAAGATCTGCATC 3057017 >seq6 Length=25711811 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| |||||||| || | |||||||||||| Sbjct 23416743 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGCTGC 23416684 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 23416683 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATNCCCTCCTTGTCCTGGATCTTG 23416624 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || || || || | ||||| ||| | || ||||| || |||| Sbjct 23416623 GCCTTCACGTTGTCG--ATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGG 23416566 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || || |||||||| Sbjct 23416565 TCAGGGTCTTGACGAAGATCTGCAT 23416541 >seq1 Length=36915442 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | ||| |||||||||||||||| ||| || | Sbjct 10946959 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 10947018 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| || ||| | | ||||||||| || ||| ||| | | Sbjct 10947019 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 10947078 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || || || || || || || || ||| Sbjct 10947079 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTC 10947136 Query 48713 ACAAAAATCTGCATCGTG 48730 || || ||||||||| || Sbjct 10947137 ACGAAGATCTGCATCTTG 10947154 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| ||| |||||||||||||||| ||| || | Sbjct 21234715 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 21234656 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | | ||||||||| | ||| ||||| Sbjct 21234655 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTT 21234596 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || ||| | |||| ||| | || ||||| || || || || || ||||| Sbjct 21234595 CTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCAC 21234536 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 21234535 GAAGATCTGCATC 21234523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251138392012