Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq10 594 6e-165 seq2 89.7 6e-13 >seq10 Length=19274048 Score = 594 bits (658), Expect = 6e-165 Identities = 698/941 (74%), Gaps = 17/941 (2%) Strand=Plus/Plus Query 135389 ACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTGATGATTCCTACTCTT 135448 || |||||||| ||||| || || | || |||||||| ||||||| ||||| ||| Sbjct 17610093 ACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTT 17610151 Query 135449 CTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTG 135506 | | | || || |||| |||||| | || ||||||||||| ||||| || ||||||| Sbjct 17610152 ATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTG 17610210 Query 135507 ACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTG 135566 | || || || || |||||| |||||||| || | |||||||| || || ||||||||| Sbjct 17610211 ATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTA 17610270 Query 135567 CTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTT 135626 | || | ||| || || |||| | ||||| || || || ||||||||||| | Sbjct 17610271 CCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCAT 17610330 Query 135627 CTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTA 135686 || ||||||||||| |||| ||||| ||||||||| | ||| | || | |||||| | Sbjct 17610331 CTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTAC 17610390 Query 135687 TCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCC 135746 | ||||| | ||| |||||||| ||||||||||| || ||| ||||||||||| | Sbjct 17610391 TTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTC 17610450 Query 135747 CTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCT 135806 |||||||| ||| || || ||||| |||||||| |||||||||||||||||| || | | Sbjct 17610451 CTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTT 17610510 Query 135807 ACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTA 135866 |||| |||| ||||| |||| |||||||||||| | || || ||||| ||||| | Sbjct 17610511 ACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCA 17610570 Query 135867 ACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGG 135926 ||| ||| |||| ||||||||||| || ||||| || |||||||| || |||||||| | Sbjct 17610571 ACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAG 17610630 Query 135927 GAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCT 135986 | || ||||| || ||||| ||||| || ||| |||||||||||| | | || |||| Sbjct 17610631 GTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCT 17610690 Query 135987 CTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTC 136046 ||||| | | | || || ||||| ||||| || | ||||||| || |||| Sbjct 17610691 CTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTC 17610750 Query 136047 AAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCC 136106 |||| ||||||||||| || ||||| || ||||||||||| ||||||| Sbjct 17610751 AAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCC 17610797 Query 136107 AATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTG 136166 ||||||| || |||||||||||||| ||||||| ||| | | |||||||||||| | Sbjct 17610798 AATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAG 17610857 Query 136167 TCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGGATTCA 136226 | || || ||||| |||| | || | ||| ||||| ||||| || || ||||||| Sbjct 17610858 TAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCA 17610917 Query 136227 ACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATGTGC 136286 | |||||||| || | || | ||||||| || | || || ||||| ||| | Sbjct 17610918 ATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCA 17610977 Query 136287 TGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 | || |||||| ||| |||||||| || |||||||| ||| Sbjct 17610978 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGT 17611018 >seq2 Length=31686972 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138348 GCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCC 138407 ||||| || || |||||| | | ||| | || || || ||||| ||||| | ||||| Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 138408 TTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGT 138467 |||||||||||||| || || || | | || | |||||||| || ||||||||||| Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGG 31659825 Query 138468 GCTACAGTAGAAAA 138481 || || || ||||| Sbjct 31659826 GCAACCGTGGAAAA 31659839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627967905804800