Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq10 515 1e-141 >seq10 Length=19274048 Score = 515 bits (570), Expect = 1e-141 Identities = 696/970 (72%), Gaps = 15/970 (2%) Strand=Plus/Plus Query 19305 ACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTA 19364 || || ||||| ||||| ||||| | || |||||||| || | ||||| ||| |||| Sbjct 17610093 ACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTA 17610152 Query 19365 CTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGAT 19424 | | || ||| || ||||| ||||||| ||||| || || || |||||||| ||| Sbjct 17610153 TTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGAT 17610212 Query 19425 GGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCA 19484 || || |||||||| ||||| || || ||| | ||||||||||||||||| ||||| | Sbjct 17610213 GGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACC 17610272 Query 19485 GTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACT 19544 | ||||| | || ||| | ||| |||||||||| || || |||||||| | || Sbjct 17610273 ATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCT 17610332 Query 19545 TTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATA 19604 | ||||||||||||||||| |||||||| ||| | || |||| | ||||||||| | Sbjct 17610333 GTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTT 17610392 Query 19605 GGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCA 19664 || ||||| || ||| | |||||||||| || | | | || ||| | || Sbjct 17610393 GGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCT 17610452 Query 19665 TGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTA 19723 ||||| || |||||| |||| || | |||| ||| |||||| ||||| | |||| Sbjct 17610453 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTA 17610511 Query 19724 CCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAA 19783 ||| |||| ||||| ||||| ||||||||||||| | || || ||||||||||| || Sbjct 17610512 CCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAA 17610571 Query 19784 CTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGG 19843 ||||||| | |||||||| ||||| || || |||||||||||||| || |||||| | || Sbjct 17610572 CTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGG 17610631 Query 19844 TGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTC 19903 ||| ||||| |||||||| || || || ||| ||||||||| || | ||||| || || Sbjct 17610632 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTC 17610691 Query 19904 CTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCA 19963 | |||| |||||| ||||| | | ||| || | || || | || || || Sbjct 17610692 TAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCA 17610751 Query 19964 AGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCA 20023 ||| |||||||| ||||||||||| || || || || || || || || Sbjct 17610752 AGAGGAAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTTCCA 17610798 Query 20024 ATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGT 20083 ||||||| ||| || || |||||||||||||| ||||| | | | ||| || || || Sbjct 17610799 ATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGT 17610858 Query 20084 TGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAA 20143 || || ||| | || | | || || | |||||||||||||| || || || || || Sbjct 17610859 AGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAA 17610918 Query 20144 CTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATT 20203 || ||||| || ||||||||| | | || | || || ||||||||| | | Sbjct 17610919 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 17610978 Query 20204 AAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACT 20263 || | ||||| || || | ||||| |||||||| || ||||||| |||||||| || Sbjct 17610979 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCT 17611038 Query 20264 TGATTTAGCT 20273 || ||||| Sbjct 17611039 AGACCTAGCT 17611048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144441579417072