Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq10 475 4e-129 >seq10 Length=19274048 Score = 475 bits (526), Expect = 4e-129 Identities = 686/965 (71%), Gaps = 17/965 (2%) Strand=Plus/Plus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-A 170744 ||| || || || | ||| |||| ||||||||||| || |||||||| | ||| | | Sbjct 17610098 CACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGA 17610156 Query 170745 CTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAA 170804 | || || || || ||| | || ||||||||||| |||||||| ||||| || || | Sbjct 17610157 CCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTA 17610216 Query 170805 TCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAG 170864 | | || || ||| | |||||||| | || || ||||| || ||||||||| | | | Sbjct 17610217 TTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTG 17610276 Query 170865 TTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGG 170924 |||| |||| || | ||||| ||||| || || || |||||||| || || | | Sbjct 17610277 TTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTG 17610336 Query 170925 ACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAA 170984 | |||||||| ||||| || |||||||| || || || || | |||||| | |||| Sbjct 17610337 ATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 17610396 Query 170985 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 171044 | || || |||||| | |||||||||| | | | || || ||| | ||||||| Sbjct 17610397 TAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 17610456 Query 171045 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 171104 | ||| ||||| ||||| ||||| | || || ||| || ||| | | || || Sbjct 17610457 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTA 17610516 Query 171105 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 171164 | ||||| || |||| |||||||||||| |||| || || ||||| |||||||| | Sbjct 17610517 TTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 17610576 Query 171165 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224 || | || ||||| ||||| || ||||| || ||||| || || || ||| |||||||| Sbjct 17610577 TGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 17610636 Query 171225 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTC 171284 | ||| | ||||| ||| || |||||||| ||||| |||| | || || ||| | Sbjct 17610637 CTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTT 17610696 Query 171285 TAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAG 171344 | ||||| || || ||||| ||||| | || | || || | || || ||||| | Sbjct 17610697 TGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGG 17610756 Query 171345 AAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATG 171404 |||| || ||||| ||||| || |||||||| ||||||||||| |||| Sbjct 17610757 AAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTTCCAATATG 17610803 Query 171405 CATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTG 171464 | || |||||||||||||| |||||||||||| | | || | |||||||| | Sbjct 17610804 CTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGA 17610863 Query 171465 TATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCA 171524 | ||||| || || | ||||| |||| ||||| ||||| || ||||||||||| |||| Sbjct 17610864 TTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCA 17610923 Query 171525 ACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAAC 171583 ||||||| || || ||| || || || || | || |||| ||| | | ||| Sbjct 17610924 ACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 17610982 Query 171584 AGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGAC 171643 | || || ||||| |||||||| ||||| ||| | |||| ||||||||||| |||||| Sbjct 17610983 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGAC 17611042 Query 171644 CTAGC 171648 ||||| Sbjct 17611043 CTAGC 17611047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268714459680