Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 3e-15 seq3 95.1 3e-14 seq2 95.1 3e-14 seq11 84.2 6e-11 >seq6 Length=25711811 Score = 98.7 bits (108), Expect = 3e-15 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || | ||| | |||||| | || | Sbjct 3088404 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTCATAAGC 3088345 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || |||||||||||||| | |||||| |||| || || | || || || Sbjct 3088344 AAATCTGCTGGAGGAATTGGTGTATCAGTTCACAATATTCGAGCTACTG-GGAGCTATAT 3088286 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| ||| |||||| | ||||| ||||| ||||| || | |||| Sbjct 3088285 CCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACGTGTTTTCAATGATAC 3088226 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || |||||||| ||| | |||||| Sbjct 3088225 TGCCCGTTATGTTGATCAAGGTGGAGGCAAGAG-AAAGGG 3088187 >seq3 Length=33311619 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 || |||||| ||| || | ||| |||||||||| |||| |||||||||||||||||| Sbjct 22936858 GCGCCATGAGCAATCATACAGTCCCTCTCCATCTCTCCAAACCGGAGACCACCATCGCGT 22936799 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGG----TTGCGTGC 371215 || || || |||| || | ||||||| ||| | ||| ||| | | ||| Sbjct 22936798 GAGCGCCCCTCTGCAGGTTGTCTGGTAAGTATCTGCACAGGACCACGGCCTCTAGAGTGA 22936739 Query 371216 ATGTGACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAAT 371275 || ||||||| | ||||||||||| || | ||| |||||| ||| ||| ||||| Sbjct 22936738 AT----CTTGTCATCCACCATGTGCTTAAGTCTCTGGTAATAAGTAGGACCAAGGAAAAT 22936683 Query 371276 CAT 371278 ||| Sbjct 22936682 CAT 22936680 >seq2 Length=31686972 Score = 95.1 bits (104), Expect = 3e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT-TAAGAATTGTGCTCTTATTTC 363680 ||||| || ||| ||| ||||| || | ||| || || | ||||| ||||| || Sbjct 30270592 ATGAAAGATGATAGCATTGAGGGAATTTATGATACTCTCTCAGAAT-GTGCTACCATAAG 30270650 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 ||| ||| || ||||||||| | || || |||||| || | || || | ||||||| Sbjct 30270651 CAAATGTGCTGGTGGAATTGGTCTCTCAATTCACAATATTAGAGCTACTGGG-AGTTACA 30270709 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 |||| || ||| ||| || |||||| | ||||||||||| ||||| || | ||| Sbjct 30270710 TTCGAGGAACAAATGGAACATCTAATGGGATTGTTCCCATGCTGCGTGTTTTCAATGATA 30270769 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || || ||||| ||| | ||||| Sbjct 30270770 CTGCACGTTATGTTGATCAAGGCGGAGGCAAGAGAAAAGG 30270809 >seq11 Length=23014695 Score = 84.2 bits (92), Expect = 6e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| | |||| ||| || ||||| |||||||| || ||||||||||| Sbjct 13889985 CCAGTTTTATGTTGAGAGCGGGGAGCTATCGTGCCAGATGTATCAACGCTCTGCTGATAT 13890044 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || ||||||||||| || || |||||| || | || || || | | | || ||||| Sbjct 13890045 GGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACATACATGATTGCTCA 13890104 Query 111821 TTTT 111824 | || Sbjct 13890105 TGTT 13890108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353399609384