Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq5 82.4 6e-11 >seq5 Length=24206129 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| |||||||| || | || || |||||||||||| | || ||||| Sbjct 7376667 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCTTGGAGGTTGAGTCGTC 7376608 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| || ||||| || ||| ||| ||| || || || ||| | ||| |||| Sbjct 7376607 GGACACAATT-GACAACGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATC 7376549 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| |||| || | ||| ||||| || | || |||| | ||| | || | ||| | Sbjct 7376548 AGCAGCGACTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGGTTACA 7376489 Query 115464 ACATTCAAAAAGAGTCTAC 115482 |||| || || ||||| || Sbjct 7376488 ACATCCAGAAGGAGTCCAC 7376470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343937793440