Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq10 558 4e-154 seq2 129 7e-25 seq8 102 9e-17 >seq10 Length=19274048 Score = 558 bits (618), Expect = 4e-154 Identities = 706/968 (73%), Gaps = 17/968 (2%) Strand=Plus/Plus Query 166075 ACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCA 166134 ||| | ||||||||||| |||| |||||||| ||||||| || || | ||| | Sbjct 17610099 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 17610158 Query 166135 GCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGAT 166193 ||||| ||||| || || |||| ||| | || || ||||| || ||||| ||||| || Sbjct 17610159 GCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 17610217 Query 166194 CCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 166253 |||||||| || | || ||| || | || || ||||| || ||||||||| | |||| Sbjct 17610218 TCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGT 17610277 Query 166254 CCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGA 166313 || | || || | || | ||||| || || || |||||||| ||||| |||| Sbjct 17610278 TCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 17610337 Query 166314 TGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCAT 166373 ||| ||| | || || || ||||||| |||| | || | |||||| | | || | Sbjct 17610338 TGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 17610397 Query 166374 CTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGAT 166433 | || ||||||||||| |||||| || || ||| || ||||||||||||||||| Sbjct 17610398 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 17610457 Query 166434 TTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTT 166493 | || ||||| || || ||||||||||| || | || || ||| || | || ||| | Sbjct 17610458 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTAT 17610517 Query 166494 CGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACAT 166553 |||||||| ||||| ||| | ||||| | || || ||| || ||||||| || Sbjct 17610518 TGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTAT 17610577 Query 166554 GCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGC 166613 | |||| ||||| |||||||| |||||||| ||||| || || || ||| | |||||||| Sbjct 17610578 GATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 17610637 Query 166614 AGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCT 166673 ||||||||||| || || || ||| || ||||| || | | || || || | | | Sbjct 17610638 TGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTC-TAGTT 17610696 Query 166674 CG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAG 166732 | || | || |||||||||| || ||| || | ||||||| ||||||||||| | Sbjct 17610697 TGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGG 17610756 Query 166733 AAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACG 166792 ||||||| || || || ||||| ||||||||||| ||||||||||| | Sbjct 17610757 AAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATG 17610803 Query 166793 CTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTA 166852 || || ||||||||||| || | ||||||||| | | || |||||||| || || | Sbjct 17610804 CTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGA 17610863 Query 166853 TCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCA 166912 | ||||| |||||| | ||| |||| || ||||| ||||| || ||||| ||||| |||| Sbjct 17610864 TTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCA 17610923 Query 166913 ACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACC 166972 |||| || | | ||| | || ||||| || | || |||||||| ||| || |||||| Sbjct 17610924 ACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACC 17610983 Query 166973 GTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATC 167032 ||||| ||| |||||||||||||||||||| ||| ||||||||||||||||||| || | Sbjct 17610984 GTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACC 17611043 Query 167033 TTGCTGCT 167040 | ||| || Sbjct 17611044 TAGCTACT 17611051 >seq2 Length=31686972 Score = 129 bits (142), Expect = 7e-25 Identities = 130/168 (77%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 166852 ATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 166911 || ||||| |||||| | ||| |||| || ||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 166912 AACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAAC 166971 ||||| || | | ||| | || ||||| || | | |||||||| ||| || ||||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 166972 CGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAAC 167019 ||||| ||| | |||||||||||||||||| |||||||||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 167783 GCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCT 167842 |||||||||||| ||||| | || ||| | || || || ||||| |||||| | ||||| Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 167843 TTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGG 167901 || |||||||||||||||||||| | |||||| || |||| | || || ||||| Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 31659824 >seq8 Length=22678724 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 166957 GCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCAC 167016 || ||| || |||||| |||| ||| |||||||||||||||||||| |||||||||||| Sbjct 21568437 GCTGATATCATCAACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCAC 21568378 Query 167017 AACTTCCCTCTGGATCTTGCTGCT 167040 ||||||||||| || || |||||| Sbjct 21568377 AACTTCCCTCTAGACCTAGCTGCT 21568354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567231914915200