Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 5e-14 seq6 91.5 2e-13 seq3 91.5 2e-13 seq7 89.7 6e-13 seq4 87.8 2e-12 seq2 87.8 2e-12 seq12 86.0 7e-12 seq11 86.0 7e-12 seq1 84.2 2e-11 >seq10 Length=19274048 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 12360342 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 12360283 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||| ||||||| Sbjct 12360282 GTGGGTTCAAATCCCACTTCTGAC-AATTATT 12360252 >seq6 Length=25711811 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 19415619 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 19415560 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| |||||| ||||| || Sbjct 19415559 GCGTGGGTTCAAATCCCACTTCTGACATTTTATTTTT 19415523 >seq3 Length=33311619 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/105 (81%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 2903858 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 2903917 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGA--ATTTTT 126366 ||||||| || ||||| |||||| | |||| || || |||||| Sbjct 2903918 TGGGTTCAAATCCCACTTCTGACACAATATT-TTCGATCATTTTT 2903961 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 31271782 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 31271841 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTAT 126356 ||||||| || ||||| |||||| | | |||| Sbjct 31271842 TGGGTTCAAATCCCACTTCTGACATAATTTTAT 31271874 >seq7 Length=24128185 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/90 (83%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 6200618 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 6200677 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATT 126351 |||||||| || ||||| |||||| |||| Sbjct 6200678 GTGGGTTCAAATCCCACTTCTGACATAATT 6200707 >seq4 Length=27574323 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 14126087 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 14126030 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| |||||| || Sbjct 14126029 TTCAAATCCCACAGCTGTCAAATTTTT 14126003 >seq2 Length=31686972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 31112798 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 31112739 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 31112738 GCGTGGGTTCAAATCCCACTTCTGACA 31112712 Score = 82.4 bits (90), Expect = 9e-11 Identities = 79/98 (81%), Gaps = 5/98 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 17446562 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 17446505 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTGGAATTT 126364 ||| || |||||| ||| ||| | |||| || ||||| Sbjct 17446504 TTCAAATCCCACAGCTGTCAATTCTATTTTT--AATTT 17446469 >seq12 Length=20550741 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 658916 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 658975 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 658976 TGGGTTCAAATCCCACTTCTGACA 658999 >seq11 Length=23014695 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 822367 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 822426 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 822427 TGGGTTCAAATCCCACTTCTGACA 822450 >seq1 Length=36915442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/92 (82%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 31465686 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 31465629 Query 126328 TTCGAACCCCACACCTG--ACAAATTATTATT 126357 ||| || |||||| ||| |||| ||||| || Sbjct 31465628 TTCAAATCCCACAGCTGTCACAATTTATTCTT 31465597 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 36322325 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 36322382 Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 |||||| || |||||| ||| || |||| || || Sbjct 36322383 GGGTTCAAATCCCACAGCTGTCATAATTTTTCTT 36322416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860716470880