Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6 152 1e-31 seq2 95.1 2e-14 seq12 93.3 9e-14 seq10 93.3 9e-14 seq5 93.3 9e-14 seq3 93.3 9e-14 seq1 93.3 9e-14 seq9 91.5 3e-13 seq8 91.5 3e-13 seq11 87.8 4e-12 >seq6 Length=25711811 Score = 152 bits (168), Expect = 1e-31 Identities = 553/853 (65%), Gaps = 22/853 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| |||||||| ||||||||||||| | | Sbjct 7420519 TCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTTGGCG 7420578 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| ||| ||||| | || || |||||| || || || || | Sbjct 7420579 ACGTTGTACATCTTCTTGCAGCCGAGTGCCATGAGGAGGCGGTCGGCGACGAATTCGATG 7420638 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || || ||||||||| | | |||| ||| || || |||| Sbjct 7420639 TACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGC-GCGTCGCAGAC 7420697 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||| | ||| || | || || || | || || | || | ||| || Sbjct 7420698 GAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCGGACGCGCGCCTCGTCGAG 7420757 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||| || ||| ||||| | | || | |||||| ||||||||||| Sbjct 7420758 CTTGCCGCGGAGGAGGTCGTAGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCG 7420817 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | ||||| ||||| | ||| || ||| |||||||||| Sbjct 7420818 GGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTTCTTGAGCCAGAA 7420877 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| ||||| ||||| || ||||| | | |||||||| || | | || || ||||| Sbjct 7420878 GATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCGACGAGGCG 7420937 Query 251982 CTCAGCAAACGACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCTTCTTTCCA 252039 ||| || || || | || || | | | | || ||||| | ||||| | Sbjct 7420938 CTCGGCGAAGCGCTCG-CCACCGTCGATCCAGCGCATG-GCCCAGTCGGCCTTGCGGCGC 7420995 Query 252040 ACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATG 252099 || || |||| || ||||| || || || || | |||||| |||| |||| Sbjct 7420996 ACGGCCGGGACGGTGTCGATGGCGCGGAACAGCCGGTCCTTCTCGGCGCCGTCGCGGATG 7421055 Query 252100 AGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAA 252159 | || ||||| || ||||||||||| || |||||| ||| || |||||| | Sbjct 7421056 TAGGTCTCGAGCAGCAGCGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAG 7421115 Query 252160 GCATAGAATAGACGCGCGGAAGGGTCGGTGACTT--CCGT-GGA---AAAGTTGTTTGCA 252213 | |||| || |||| || |||| ||| | ||| ||| || || || Sbjct 7421116 CCGTAGA--AGGCGCG----AGCCTCGGCGACCTGCACGTCGGACATGAACCTGGAGGCG 7421169 Query 252214 ATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAG 252273 | |||||| | ||| ||||| ||| | | || |||||| | || | | ||||||| Sbjct 7421170 AGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGAGATGAAG 7421229 Query 252274 TGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AA 252331 || ||||| ||| | ||| | | ||||| | ||| | ||||| | Sbjct 7421230 TGGCGCTCGTCGGGGGACAGCGCGGCGTCCCAGTGGCGCGCGTC--GGCGGAGAGGTCCA 7421287 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGT 252391 | || ||| |||||||||| | | ||||||||||||||| | | | | | |||| Sbjct 7421288 CCTCCTCCGCCGTCCAGAACGACGCCACCGCCTTCTTGTAGAACTCCCAGATCTGCGGGT 7421347 Query 252392 ACTTGATTGGGAA 252404 || |||| ||||| Sbjct 7421348 ACCTGATCGGGAA 7421360 Score = 104 bits (114), Expect = 5e-17 Identities = 255/384 (66%), Gaps = 2/384 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| |||||||| ||||||| ||||| | | Sbjct 1225592 TCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTTGGCG 1225533 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| || || || | || | ||||| || || ||||| | Sbjct 1225532 ACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCGGTCGGCGACGAACTCGATG 1225473 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || || |||||| || | | |||| ||| || || |||| Sbjct 1225472 TACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGACGGGGAGC-GCGTCGCAGAC 1225414 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||| | ||| || | || || || | || || ||| || ||| | || Sbjct 1225413 GAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCTGGACGCGTGACTCGTCGAG 1225354 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||| || ||| ||||| | | || | ||| |||||||||||||| Sbjct 1225353 CTTGCCGCGGAGGAGGTCGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGACCCTCGTCGCG 1225294 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| ||||||||| | ||||| ||||| | || || ||| |||||||||| Sbjct 1225293 GGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCGCGCTTCTTGAGCCAGAA 1225234 Query 251922 GATTGCGCAAAAGGATCCAGAGAA 251945 ||| ||||| || || || ||||| Sbjct 1225233 GATGGCGCAGAATGAACCCGAGAA 1225210 >seq2 Length=31686972 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 |||| || |||||||| ||||||||||| ||| |||| ||||| || |||||||||| Sbjct 25204176 AGGTGGCACAGTTTTCCGGTTATGTATCAGAACACTCTGCGTACCACCATGGTGAGCAGA 25204117 Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776 || | || ||||| || ||||| || || | ||| ||||| || ||||| ||| Sbjct 25204116 GTTTAGCTAGTACCATTACTGGAATGGCTCAAGATTTTGTTGGCAGCAATAACATAAACC 25204057 Query 218777 TGCTGCTCCCCAACGGTCAGTTTGG 218801 | ||| ||||| ||||| ||||| Sbjct 25204056 TCTTGCAGCCCAATGGTCAATTTGG 25204032 >seq12 Length=20550741 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 17084455 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17084514 Query 142563 CCCCAC 142568 |||||| Sbjct 17084515 CCCCAC 17084520 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 17335077 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17335018 Query 142564 CCCAC 142568 ||||| Sbjct 17335017 CCCAC 17335013 >seq10 Length=19274048 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 13541295 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13541236 Query 142563 CCCCAC 142568 |||||| Sbjct 13541235 CCCCAC 13541230 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142513 GCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 17421447 GCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 17421392 >seq5 Length=24206129 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 12375042 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12374983 Query 142563 CCCCAC 142568 |||||| Sbjct 12374982 CCCCAC 12374977 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 20747149 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 20747090 Query 142563 CCCCAC 142568 |||||| Sbjct 20747089 CCCCAC 20747084 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 21181459 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 21181400 Query 142563 CCCCAC 142568 |||||| Sbjct 21181399 CCCCAC 21181394 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||| ||| || ||||||| || |||||||||||||||||| Sbjct 17882250 GCCCGTCTAGCTCAGTCGGTAGAACGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17882191 Query 142564 CCCAC 142568 ||||| Sbjct 17882190 CCCAC 17882186 >seq3 Length=33311619 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 15758223 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15758282 Query 142563 CCCCAC 142568 |||||| Sbjct 15758283 CCCCAC 15758288 >seq1 Length=36915442 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 25202724 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 25202783 Query 142563 CCCCAC 142568 |||||| Sbjct 25202784 CCCCAC 25202789 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 26012939 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 26012998 Query 142563 CCCCAC 142568 |||||| Sbjct 26012999 CCCCAC 26013004 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 30492243 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 30492302 Query 142563 CCCCAC 142568 |||||| Sbjct 30492303 CCCCAC 30492308 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 36824860 ATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 36824919 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 36824920 AGCCCCAC 36824927 >seq9 Length=19219615 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 9784434 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9784493 Query 142564 CCCAC 142568 ||||| Sbjct 9784494 CCCAC 9784498 >seq8 Length=22678724 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 14826162 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14826221 Query 142564 CCCAC 142568 ||||| Sbjct 14826222 CCCAC 14826226 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 14830376 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14830435 Query 142564 CCCAC 142568 ||||| Sbjct 14830436 CCCAC 14830440 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 15073666 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15073725 Query 142564 CCCAC 142568 ||||| Sbjct 15073726 CCCAC 15073730 >seq11 Length=23014695 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||| ||||| Sbjct 22851735 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGGTCGAG 22851794 Query 142563 CCCCAC 142568 |||||| Sbjct 22851795 CCCCAC 22851800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836641970092