Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 430 2e-115 >seq6 Length=25711811 Score = 430 bits (476), Expect = 2e-115 Identities = 541/729 (74%), Gaps = 18/729 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || |||||||| ||| ||||||||||| Sbjct 7421213 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATG 7421154 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||| ||| |||||||||||||||||| ||||| |||||| Sbjct 7421153 TCCGACGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 7421094 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | || ||||||| || || |||| Sbjct 7421093 ATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAG 7421034 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGGC 42661 || |||||||| ||||| || || | ||| || | | ||||| |||||||| Sbjct 7421033 GACCGGCTGTTCCGCGCCATCGACACCGT-CCCGGCCGTGCGCCGCAAGGCCGACTGGGC 7420975 Query 42662 GCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | ||||||||| || ||| ||| |||| |||| | || || ||||| || Sbjct 7420974 CATGCGCTGGATCGACGGTGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCCT 7420919 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 ||||||||| ||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 7420918 GCGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGG 7420859 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| Sbjct 7420858 GGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACT 7420799 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| ||||| ||| ||| Sbjct 7420798 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGGCGCG 7420744 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | ||| || | || ||||| || ||||||| ||||||| || | |||| Sbjct 7420743 CGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCT 7420684 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || |||||||||||| |||||||||| || |||||||| | | |||||| Sbjct 7420683 CCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAATTCGTCGC 7420624 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTC 43076 ||||| ||||| || || || | || | | |||||| |||| ||||||| Sbjct 7420623 CGACCGCCTCCTCATGGCACTCGGCTGCAAGAAG-ATGTACAACGTCGCC-AACCCCTTC 7420566 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| |||||| || |||||||||||||||| |||||||||||||||| | Sbjct 7420565 GACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGC 7420506 Query 43137 GACTACCAG 43145 ||||||||| Sbjct 7420505 GACTACCAG 7420497 Score = 230 bits (254), Expect = 4e-55 Identities = 306/413 (74%), Gaps = 13/413 (3%) Strand=Plus/Plus Query 42738 TTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACT 42796 |||||||| | ||| | ||||||||||||||||| || || || ||||| || || Sbjct 1225210 TTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTC-ATGCCGGGCCT 1225268 Query 42797 CACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 ||||||||| ||||| |||||| | | |||||||| || || | ||||| |||||||| Sbjct 1225269 CACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCT 1225328 Query 42857 CCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTCCGGGCCATCATC 42914 ||| | | || || |||| | ||||| |||| || || |||| || ||| || Sbjct 1225329 CCTCTAC--GA-CCTCCTCCGCGGCAAGC--TCGACGAGTCACGCGTCCAGGAGATCGTC 1225383 Query 42915 ACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTC 42974 | || |||||||| ||||||| ||||||| || | |||| ||||| | || ||| Sbjct 1225384 GCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTC 1225443 Query 42975 GGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTG 43033 || |||||| ||| |||||| || |||||||| ||| ||||||||||| || || || Sbjct 1225444 GGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATG 1225503 Query 43034 CCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTCGACTTTATGGAGAACA 43092 | |||| || | | |||||| |||| ||| ||||||| |||||| || Sbjct 1225504 GCGCTCGGGTGCAAGAAG-ATGTACAACGTCGCC-AACCCGTTCGACTGGATGGAGCTCA 1225561 Query 43093 TCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||| || |||||||||||||||| |||||||||||||||| |||||||||| Sbjct 1225562 TCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAG 1225614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339058349120