Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 1e-12 seq1 87.8 1e-12 seq6 84.2 2e-11 seq9 82.4 6e-11 seq3 82.4 6e-11 >seq5 Length=24206129 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||| |||| || | ||| ||||||||| ||||||||| |||| || || Sbjct 7376449 AGACGGAGCGCCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAACCTGCTAAGGTGCGG 7376508 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||| ||||| |||||||||||| || | || ||| Sbjct 7376509 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCC 7376568 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| | | | ||||||| | || | | || | || || || | || Sbjct 7376569 TTGTCC-TGAATCTTTGCTTTCACGTTGTCAATTGTGTCCGACGACTCAACCTCCAAGGT 7376627 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || ||||| ||||| | ||| || ||||||||||||||| Sbjct 7376628 AATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 7376667 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33916 AGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCG 33975 ||||| || ||||| || ||||||||| || ||||| || |||| || |||| Sbjct 7376683 AGCACTAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCC 7376742 Query 33976 TCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCC 34035 | | | ||||||||| || || ||||||||||| ||| | || | || ||| |||||| Sbjct 7376743 TTGAGCTACTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGCGGGGATGCCCTCCTTGTCC 7376802 Query 34036 ATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGTTATT 34092 ||| || ||| || | || | |||||| ||| ||| || | ||| || Sbjct 7376803 TGAATCTTCGCCTTCACATTG---TCGATTGTATCAGAAGACTCGACCTCAAGCGTAATG 7376859 Query 34093 GTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||||||||||| || || ||||| || ||||| Sbjct 7376860 GTCTTTCCGGTTAGGGTCTTGACAAAAATCTGCAT 7376894 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || || || || ||||| ||| ||||||||| |||||||| || || Sbjct 19880835 CCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC- 19880777 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || || | |||||||| ||||| ||||| |||||||| ||| | Sbjct 19880776 AAGGGTC-CTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGG 19880718 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | ||| |||||| || ||| ||||| | | | |||||| ||| || Sbjct 19880717 GAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAA 19880658 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || | || || |||||||||||||| Sbjct 19880657 CCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 19880609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/230 (68%), Gaps = 13/230 (6%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || || || || || || ||| ||| |||||||||||||||||||| Sbjct 7377126 CCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCG 7377185 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||| ||||| || ||||||||||| | || Sbjct 7377186 AGGGTGCGTCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTTAGGTGGA 7377245 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | | ||| |||||| ||| | ||| | ||| | ||| | | || | Sbjct 7377246 ATACCCTCCTTGTCCTGAATCT---------TGGCCTTGACATTGTCAATCGTGTCAGAG 7377296 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || ||| |||| || || || || ||||| ||||||||||| ||||| Sbjct 7377297 GACTCAACC-TTATGGTATTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 7377345 >seq1 Length=36915442 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| |||||||| || |||| ||| Sbjct 21234741 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGC 21234682 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || || |||||||| ||| ||| | | ||| Sbjct 21234681 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCC 21234622 Query 34030 TTGTCC 34035 |||||| Sbjct 21234621 TTGTCC 21234616 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || ||||| ||||||||| |||||||| || |||| ||| Sbjct 21238867 AGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGC 21238808 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || || |||||||| | | ||| |||| ||| Sbjct 21238807 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTGCGGCGGGACGCCCTCC 21238748 Query 34030 TTGTC 34034 |||| Sbjct 21238747 CTGTC 21238743 >seq6 Length=25711811 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || | ||| ||||||||||||||||||||| |||| | || Sbjct 22963783 AGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGT 22963842 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||| || ||||||||||| ||| || | | ||| Sbjct 22963843 CCATCCTCGAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCC 22963902 Query 34030 TTGTCCATAATTTT 34043 |||||| ||| || Sbjct 22963903 TTGTCCTGAATCTT 22963916 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || ||||| ||||| ||| ||||||||| |||||||| || ||| Sbjct 23416767 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 23416708 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || |||| ||||||||||| || || || |||||||| ||| || Sbjct 23416707 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 23416648 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 23416647 ATNCCCTCCTTGTCC 23416633 >seq9 Length=19219615 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || |||| ||||| || |||||||||||||||||| || ||| Sbjct 11939321 CCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGCC 11939262 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | ||| | || |||| ||||||||||| ||||||| ||||| ||||| Sbjct 11939261 AGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATC 11939209 >seq3 Length=33311619 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||||||| ||||||||| |||||||| || |||| || Sbjct 7808373 AGGCGAAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 7808314 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| ||||| ||||| || || ||||||||||| ||| Sbjct 7808313 CCATCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCC 7808269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062341929624