Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 140 8e-28 seq1 140 8e-28 seq6 131 4e-25 seq2 125 2e-23 seq4 123 6e-23 seq8 105 2e-17 seq9 89.7 1e-12 >seq5 Length=24206129 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || ||||| || | ||| || || ||||| || ||||||||| Sbjct 3088042 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 3087983 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||| || ||||| || ||| Sbjct 3087982 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 3087923 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || |||||||| || || | || || || || Sbjct 3087922 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 3087863 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 3087862 TCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 3087816 Score = 118 bits (130), Expect = 3e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||| | || || || |||| || || || |||||||| ||||| || Sbjct 7376667 TCCACCCCTGAGCTTGAGCACTAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCAGC 7376726 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||||||||| | | | || || |||||||| || ||||| || | || Sbjct 7376727 CAGGGTGCGTCCGTCCTTGAGCTACTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGCGGG 7376786 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || ||||| || ||||| ||||| || || || | ||| || || || Sbjct 7376787 GATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCGAC 7376846 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| ||||| || |||||||| || |||||||| Sbjct 7376847 CTCAAGCGTAATGGTCTTTCCGGTTAGGGTCTTGACAAAAATCTGCAT 7376894 Score = 118 bits (130), Expect = 3e-21 Identities = 146/197 (74%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||||||| || || || ||||| | || || || |||||| Sbjct 19881483 TCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAG 19881424 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| ||||| || |||||| || ||||| || |||||||| || || ||||| Sbjct 19881423 ATCAGGCGCTGCTGG---TCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACA 19881367 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | |||| ||| || || || || || || ||||| || || |||||| Sbjct 19881366 TTGTCGATGGTATCGGAGCTC---TCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTC 19881310 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| |||||||| Sbjct 19881309 TTGACGAAGATCTGCAT 19881293 Score = 105 bits (116), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| || || ||||| || || || | || || || |||||| Sbjct 19881255 TCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAG 19881196 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || ||||| || || ||||||||||| ||||| |||||||| Sbjct 19881195 ATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTG 19881136 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || |||| || || || || || || ||||| || || ||||||||| Sbjct 19881135 TCGATGGTGTCTGAGCTC---TCAACCTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTG 19881079 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 19881078 ACGAAAATCTGCATT 19881064 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||| || || ||||| || ||||| || || || | || || Sbjct 19880820 AGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCC 19880761 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || || |||||||||||||| || || ||| || || || || Sbjct 19880760 TCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTG---GTCCGGGGGAATCCCCTCCTTG 19880704 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || || ||||| || |||| ||| || || || || || ||||| Sbjct 19880703 TCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATA 19880644 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || |||| |||||||| || || ||||| Sbjct 19880643 GTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 19880609 Score = 86.0 bits (94), Expect = 1e-11 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || ||||| || || |||| ||| ||||| || || || ||||| || | || || Sbjct 7376905 AGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGCCAAGGTCCGA 7376964 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCA-GACGCTGTTGAGAATCTGGGATTCCTTC 288374 || || || | || || || |||||||| | |||| || || | ||||| || || Sbjct 7376965 CCATCCTCAAGCTGCTTGCCAGCGAAGATAAAGACGATGCTGGTCAAGGGGGATACCCTC 7377024 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 ||||||||||| || || |||||||| || || | || || || || || | || Sbjct 7377025 CTTATCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCTGAGGACTCAACCTCCAAAGT 7377084 Query 288435 GAT-CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| ||||| | |||| ||||| || || ||||||||| Sbjct 7377085 GATGGGTCTTTCTTGTCAAGGTCTTCACAAAGATCTGCATT 7377125 Score = 84.2 bits (92), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || | || || | ||| || || ||||| || || | || Sbjct 7376440 CCACCACGGAGACGGAGCGCCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAACCTGCT 7376499 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | || || || || |||||||| ||||| ||| || ||| Sbjct 7376500 AAGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGA---TCCGGG 7376556 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || || ||||||||||| || || | || ||| || Sbjct 7376557 GGAATGCCCTCCTTGTCCTGAATCTTTGCTTTCACGTTGTCAATTGTGTCCGACGACTCA 7376616 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | || || || || ||||||| |||||||| || || |||||| Sbjct 7376617 ACCTCCAAGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 7376667 >seq1 Length=36915442 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || || || || | || || || ||||| || ||||||||| Sbjct 10946924 CCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 10946983 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| || ||||| || ||| Sbjct 10946984 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 10947043 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | || || || || Sbjct 10947044 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 10947103 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 10947104 TCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 10947150 Score = 118 bits (130), Expect = 3e-21 Identities = 173/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 288233 TGAT-TCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGG 288291 |||| || | |||| || | |||||| | || ||||| || | ||| || || ||| Sbjct 21238890 TGATGTCGTTCATG-CCGCGGCGGAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGG 21238832 Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 || || |||||||| |||||||| ||||| || | || || || |||||||| || ||| Sbjct 21238831 ATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGC 21238772 Query 288352 TGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 || || |||| || || | || ||||| |||| || ||||| || | || Sbjct 21238771 TGCTGGTGCGGCGGGACGCCCTCCCTGTCGTGGATCCTCGCCTTGACGTTCTCGACCGAG 21238712 Query 288412 TCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 |||| || || |||||||||| ||| ||||| |||| ||||| |||||||||||| Sbjct 21238711 TCGCAGCTGTCGACCACGAGCGTGATGGTCCTCCCGTTCAGGGTCTTCACGAATATCTGC 21238652 Query 288472 AT 288473 || Sbjct 21238651 AT 21238650 >seq6 Length=25711811 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| || || || || |||| ||| || || ||||| || ||||| || Sbjct 23416767 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 23416708 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | || || || |||||||| |||||||| || ||| Sbjct 23416707 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 23416648 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | || || || || Sbjct 23416647 ATNCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACC 23416588 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 23416587 TCAAGCGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 23416541 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || || | || || || ||||| || || || Sbjct 23416998 TGGCCACCACGGAGGCGGAGCACCAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCC 23416939 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || ||||| || || || | || || || || |||||||||||||| || Sbjct 23416938 GCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGG 23416879 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| ||||| |||||||| || |||| ||| ||| || Sbjct 23416878 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCGGACGACTCA 23416819 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 23416818 ACCTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 23416769 Score = 111 bits (122), Expect = 4e-19 Identities = 130/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||| | ||| ||||||| || || ||||||||||| || || || || ||| Sbjct 7420669 TCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAATTCGTCGCCGACCGCCTCCTCA 7420610 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAAT-TCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 ||||||||| | |||| ||||||| ||| || ||||||| || ||||| || Sbjct 7420609 TGGCACTCGGCTGCAAGAAGATGTACAACGTCGCC-AACCCCTTCGACTGGATGGAGCTC 7420551 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 || || || | || ||||| ||||||||||| ||||| ||| ||||||| || Sbjct 7420550 ATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 7420498 Score = 93.3 bits (102), Expect = 1e-13 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||| | ||| ||||||| || || ||||| ||||| || || || | ||| Sbjct 1225442 TCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCA 1225501 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAAT-TCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 ||| ||||| | |||| ||||||| ||| || || |||| || ||||| || Sbjct 1225502 TGGCGCTCGGGTGCAAGAAGATGTACAACGTCGCC-AACCCGTTCGACTGGATGGAGCTC 1225560 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 || || || | || ||||| ||||||||||| ||||| ||| ||||||| || Sbjct 1225561 ATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 1225613 >seq2 Length=31686972 Score = 125 bits (138), Expect = 2e-23 Identities = 171/236 (72%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || || | ||| || || ||||| || |||||| Sbjct 3056004 TGACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3056063 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||| |||||||| || || | || || || ||||||||||||||||| || ||| Sbjct 3056064 GCGAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTG---GTCT 3056120 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTC 288417 ||| || || || || |||||||| || || ||||| || || || | || |||| Sbjct 3056121 GGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCAGAGCTC 3056180 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 3056181 ---TCAACCTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 3056233 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || || || || | ||| || || ||||| || |||| Sbjct 3056786 CATG-CCACCACGGAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 3056844 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || | || || || | || || || |||||||| |||||||| || Sbjct 3056845 CAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCG 3056904 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || || ||||| || || | || || | Sbjct 3056905 GGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACT 3056964 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| ||||||||||||||||| || |||||||| Sbjct 3056965 CCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 3057016 >seq4 Length=27574323 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| ||||||||||| Sbjct 24793102 CCACCACGGAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCA 24793043 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || ||||| || || || | || || || |||||||| || ||||| || ||||| Sbjct 24793042 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG---TCTGGA 24792986 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| || || ||||||||||| || || |||||||| || || | || || || Sbjct 24792985 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGGACTCA 24792926 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 24792925 ACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 24792876 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| ||||| || ||||| || || || || || | || || || |||||| Sbjct 24792382 TCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAG 24792323 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || || || || ||||| ||| || || || ||||| || || || ||||| Sbjct 24792322 ATAAGGCGTTGCTGG---TCTGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTCACA 24792266 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| || || || || | ||||| ||||| || || || ||||| Sbjct 24792265 TTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTA 24792206 Query 288460 ACGAATATCTGCAT 288473 |||||||||||||| Sbjct 24792205 ACGAATATCTGCAT 24792192 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || || || ||||| || || || | || || || |||||| Sbjct 24792838 TCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 24792779 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||| || || || || |||||||| || || ||||| || Sbjct 24792778 ATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTG 24792719 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || | ||||||||||| || || || ||||| || Sbjct 24792718 TCGATCGTGTCAGAGGACTCAACCTCCAAGGTGATCGTCTTGCCAGTAAGGGTCTTCACA 24792659 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 24792658 AAGATCTGCAT 24792648 >seq8 Length=22678724 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | || || || || || || ||||| || Sbjct 3995693 CCACCACGGAGACGGAGGACAAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCA 3995752 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| || || | || || || || ||||| || ||||| || || ||| Sbjct 3995753 AGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGG---TCCGGG 3995809 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||||||||| ||||| ||||| || || || | ||| || || Sbjct 3995810 GGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCGGATGACTCC 3995869 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| | ||| |||||||| || || || || |||||||| Sbjct 3995870 ACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 3995919 Score = 93.3 bits (102), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || ||||| | ||| ||||| || || || ||||| || Sbjct 3985211 CCCCCACGGAGACGGAGGACAAGATGGAGGGTGGACTCTTTCTGAATTTTGTAGTCAGCA 3985270 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||||| || || | || || || |||||||| || ||||| || || Sbjct 3985271 AGGTTGCGTCCTTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGA 3985330 Query 288367 ATTCCTTCTTTATCCTGGATTTT------CGCT--TTCACGTTTTCTATAGAATCGCTCG 288418 || || || || |||||||| || | || ||||| || || || | ||| | Sbjct 3985331 ATGCCCTCCTTGTCCTGGATCTTTACCTTCACTGCTTCACATTGTCGATGGTGTCGGATG 3985390 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| | ||| |||||||||||||| || || |||||||| Sbjct 3985391 ACTCCACCTCGAGGGTGATGGACTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 3985445 >seq9 Length=19219615 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | ||||| || || Sbjct 13561099 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 13561040 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||||||||| || ||||| ||||| |||||||| Sbjct 13561039 TCCAGCGTGATCGTCTTCCCGGTGAGCGTCTTCACGAAGATCTGCAT 13560993 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | ||||| || || Sbjct 15026790 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 15026731 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 15026730 TCCAGCGTGATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCAT 15026684 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || || || || || || || | ||||| || || ||| Sbjct 18896814 CCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCG 18896755 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 18896754 AGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 18896711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654218628136