Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 154 3e-32 >seq6 Length=25711811 Score = 154 bits (170), Expect = 3e-32 Identities = 307/452 (68%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | ||||| || || || | || || || ||| Sbjct 7420946 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 7420887 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 7420886 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 7420827 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || ||| Sbjct 7420826 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 7420767 Query 243469 CAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| | | ||| || ||| | ||| || | || || || || | | Sbjct 7420766 CGCGGCAAGCT-CGA--CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 7420710 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | ||| ||| | |||||||| | || | ||| | ||||||||| || ||| Sbjct 7420709 GAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTC 7420650 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||||||||| ||||||||| | |||| || || || | |||| Sbjct 7420649 ATGAGCCAGTACATCGAATTCGTCGCCGACCGCCTCCTCATGGCACTCGGCTGCAAGAAG 7420590 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| | |||||||| | || ||||||||||| || || || || || || Sbjct 7420589 ATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACC 7420530 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 7420529 AACTTCTTCGAGAAGCGCGTCGGCGACTACCA 7420498 Score = 127 bits (140), Expect = 5e-24 Identities = 267/395 (68%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||||||||||| ||||| ||| || | ||||| |||||| | || ||| Sbjct 1225222 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAAC 1225281 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| ||||| ||||||||||| || ||| | |||| || | || Sbjct 1225282 GAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTC 1225341 Query 243466 CTCCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAA 243522 |||| |||||| || | || ||| ||| | | ||| || | || || || || Sbjct 1225342 CTCCGCGGCAAGCTCGACGAGTC---ACGCGTCCAGGAGATCGTCGCCGACGCCGTGGAC 1225398 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 | ||| | ||| ||| | |||||||| | || | ||| | || |||||| || Sbjct 1225399 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAG 1225458 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| |||||||| | |||| ||||| || | || Sbjct 1225459 CTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAG 1225518 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || |||||||| | ||||| || | || ||||||||||| || || || || || Sbjct 1225519 AAGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAG 1225578 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || ||||||||||| ||||| ||| | || || || Sbjct 1225579 ACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 1225613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879830432200