Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 >seq6 Length=25711811 Score = 150 bits (166), Expect = 2e-31 Identities = 314/457 (69%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 7420500 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 7420559 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| || || | | | |||| Sbjct 7420560 CCAGTCGAAGGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAGTGCCAT-GAGG 7420614 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| | || ||||||| ||| || |||||| |||| ||| Sbjct 7420615 AGGCGGTCGGCGACGAATTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 7420674 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| |||| || |||| || || ||||| || ||||| Sbjct 7420675 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 7420733 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGC 126048 || | | | || | | | | ||| | | ||| | || ||| || ||| Sbjct 7420734 CTCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 7420790 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || ||| || |||||||| ||||||||||| || || |||||| || || || Sbjct 7420791 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 7420850 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 |||||| ||||||||||| | |||||| || || || || || |||||||||||||| || Sbjct 7420851 CATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCC 7420910 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||| || || ||||| || | ||| ||||| || ||| Sbjct 7420911 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 7420947 Score = 143 bits (158), Expect = 3e-29 Identities = 287/412 (70%), Gaps = 20/412 (5%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 1225611 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1225552 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| ||||| | | |||| Sbjct 1225551 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTG-CACCCGAG-CGCCATGAGC 1225497 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| Sbjct 1225496 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 1225437 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| |||| || |||| || |||||||| || ||||| Sbjct 1225436 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGAT 1225378 Query 125992 GGCGTGAATG-GTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGG 126047 | || | | ||| | | || | | ||| | | ||| | || ||| || || Sbjct 1225377 CTCCTGGACGCGTGACTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GG 1225322 Query 126048 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTG 126107 | || || ||||||||||||||| ||||||||||| || || |||||| || || | Sbjct 1225321 CGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 1225262 Query 126108 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAA 126159 ||||||| || |||||||| | |||||| || || || |||||||||||||| Sbjct 1225261 GCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAA 1225210 Score = 131 bits (144), Expect = 2e-25 Identities = 283/418 (68%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || ||||| || | || ||||| || || || |||| || | |||| Sbjct 25371685 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGC 25371744 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| ||||| |||| |||| || || | | | |||| ||||||||||||||| Sbjct 25371745 CTGTTTGTCGCGGCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTC 25371804 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCGGGCATACCACCCGCACTGCG 10953 ||||| || || ||||| || || | |||||| ||| | | | | || |||| || Sbjct 25371805 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 25371863 Query 10954 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGC 11013 ||| | |||||||| ||||||||||| ||||| ||||| || || || | ||| Sbjct 25371864 CTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 25371923 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 || || | || | ||| || |||||||||||| || |||| || || || | Sbjct 25371924 CTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTC 25371983 Query 11074 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 || |||| || || ||| || || || || || |||| ||| || || || || Sbjct 25371984 GGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 25372043 Query 11134 GGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 11190 |||||||| || || || || |||| | |||| | | | |||||| |||| || Sbjct 25372044 TGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 25372100 Score = 104 bits (114), Expect = 3e-17 Identities = 229/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 8589 CCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAG 8648 |||||| | || || ||| ||| | || | | ||||| || || || ||| | Sbjct 1771521 CCCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCCCACTGGTACACCGTC 1771580 Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708 || ||||| || |||| || ||||| || ||| ||| | |||||||||||||| || Sbjct 1771581 AACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAATCC 1771640 Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATC--- 8765 || || || ||| | | ||||| || ||||||||| | || | |||| Sbjct 1771641 CCACGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCGTCGGCCGAATCAAG 1771700 Query 8766 GTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 8825 |||| | ||| || || | | || |||||| ||||| |||||||||||| Sbjct 1771701 GTCGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGGGACTGGGGA 1771757 Query 8826 CACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAA 8885 |||| |||||| || || || ||||||| | | || || || || || | | ||| Sbjct 1771758 TTCGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTGCAGCAGGACAAGCCCGGCGAC 1771817 Query 8886 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 8927 || |||||||| || | |||| | ||| ||||| ||||||| Sbjct 1771818 TACGTCGTCGCCACCGAGGAGTCCCACACCGTCGAGGAGTTC 1771859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353510396960