Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq1 118 1e-21 seq5 116 4e-21 seq2 116 4e-21 seq4 109 6e-19 seq8 107 2e-18 >seq6 Length=25711811 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||||| || || | || || |||||||| |||||||| Sbjct 23416344 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 23416285 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 23416284 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 23416225 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || || || |||| |||||||| ||||| || || ||||| || Sbjct 23416224 GTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 23416165 Query 42197 AAAGATTTGCATTTTCAC 42214 |||||| ||||| | ||| Sbjct 23416164 AAAGATCTGCATCTGCAC 23416147 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||||| ||| |||||| ||||| |||||||||||||| || || | || || Sbjct 22963791 CACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGTCCATCCTC 22963850 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || || || ||||| ||||||||||| | || | | |||||||||| | Sbjct 22963851 GAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-T 22963909 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || | || | || | | | | | |||| || || || || | |||||||| | Sbjct 22963910 GAATCTTCGCCTTCACATTGTCGATCTTGTCCGAGGACTCGACCTCAAGAGTGATGGTCT 22963969 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | ||||| |||||||| ||||| Sbjct 22963970 TTCCTGTCAAGGTCTTCACAAAGATCTGCAT 22964000 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||||| || || | || || |||||||| || ||||| Sbjct 23416732 CTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 23416673 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||||||| ||| || || | ||| Sbjct 23416672 GATGAGACGCTGCTGGTCCGGGGGGATNCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 23416614 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || || | ||||||||| ||||| || || ||||| | Sbjct 23416613 TGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTCTTGA 23416554 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 23416553 CGAAGATCTGCAT 23416541 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| || | ||| |||||| || || |||||||| || || || || | || || Sbjct 23416978 CACCAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTC 23416919 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||||||||| || || || ||||||||||| | || | || |||||||||| Sbjct 23416918 AAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 23416859 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || || | ||| | | | |||||| ||| || || || | || ||||| | Sbjct 23416858 GATCTTCGCCTTCA-CGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTAATGGTCT 23416800 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| || ||||| ||||| Sbjct 23416799 TGCCAGTCAGGGTCTTCACGAAGATCTGCAT 23416769 >seq1 Length=36915442 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| || ||||| || ||| |||| || Sbjct 21234733 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTC 21234674 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| ||||||||||| | || | | |||||||||| Sbjct 21234673 CAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTG 21234614 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | || |||| || | ||||||||| ||||| || | ||||||||| || Sbjct 21234613 CACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTT 21234554 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || ||||| || ||||| ||||| Sbjct 21234553 CCCCGTCAGGGTCTTCACGAAGATCTGCAT 21234524 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || ||| |||| || |||||||| || ||||| Sbjct 10946959 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 10947018 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | | |||||||||| ||| || || | ||| Sbjct 10947019 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 10947077 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | |||||| || || ||||| || ||||| | Sbjct 10947078 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCA 10947137 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 10947138 CGAAGATCTGCATCTT 10947153 >seq5 Length=24206129 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | | ||| ||||| ||| |||||| || || |||||| | || | || || | Sbjct 7376451 ACGGAGCGCCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAACCTGCTAAGGTGCGGCC 7376510 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || ||||||||||| || | || | || |||||| Sbjct 7376511 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTT 7376570 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| | |||| || ||| | | | ||||| ||| || || || | || | Sbjct 7376571 GTCC-TGAATCTTTGCTTTCACGTTGTCAATTGTGTCCGACGACTCAACCTCCAAGGTAA 7376629 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||||||| || | ||||| ||||||||||||||| Sbjct 7376630 TGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 7376667 Score = 104 bits (114), Expect = 3e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| | || || |||||||| || || || Sbjct 19881028 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAA 19880969 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||||| ||| || || | ||| Sbjct 19880968 AATAAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 19880910 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || || | ||| ||||| ||||| || || ||||| | Sbjct 19880909 TGTCGATCGTGTCTGATGACTCAACCTCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCA 19880850 Query 42196 CAAAGATTTGCATT 42209 ||||||| |||||| Sbjct 19880849 CAAAGATCTGCATT 19880836 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| |||||||| || || |||| | |||| ||| || ||||| Sbjct 7376703 CTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCCTTGAGCTACTTGCCGGCGAA 7376762 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| || || | || |||||||||| ||| | || | || | Sbjct 7376763 GATGAGGCGCTGCTGGTCCGCGGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACAT 7376821 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || || || || || | ||| ||||| || || ||||| ||||| | Sbjct 7376822 TGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAATGGTCTTTCCGGTTAGGGTCTTGA 7376881 Query 42196 CAAAGATTTGCAT 42208 |||| || ||||| Sbjct 7376882 CAAAAATCTGCAT 7376894 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| ||||| || || ||| | || || |||||||| |||||||| Sbjct 19880571 TCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAG 19880512 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | ||| | | |||||||||| ||| || || | | Sbjct 19880511 ATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTG 19880452 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || || || || || || | || ||||| ||||| || || ||||| ||| Sbjct 19880451 TCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACA 19880392 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 19880391 AAGATCTGCAT 19880381 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || | || || |||||||| || ||||| Sbjct 3088007 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 3087948 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | ||||||||| ||| || || | ||| Sbjct 3087947 GATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 3087889 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | ||||||||| || ||||| || ||||| | Sbjct 3087888 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCA 3087829 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 3087828 CGAAGATCTGCATCTT 3087813 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | || | |||||| || | || |||||| ||||| ||||| ||||| Sbjct 19881292 ACCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCAGC 19881233 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||||||||||||||| ||||||| ||||||||| | || Sbjct 19881232 AAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGG 19881173 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | || |||||| ||| ||| || || | ||| | | | ||||| |||| | Sbjct 19881172 GATGCCCTCCTTATCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCTGAGCTC---T 19881117 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || || | || || || ||||| || || ||||| || || || |||||| Sbjct 19881116 CAACCTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATT 19881064 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| | || || |||||||| ||||| || Sbjct 19880800 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAA 19880741 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | |||||||||| || | |||| | | ||| Sbjct 19880740 GATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCC-TGGATCTTTGCCTTAACGT 19880682 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || || || || || | ||||| || ||||| || | ||||| | Sbjct 19880681 TGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGA 19880622 Query 42196 CAAAGATTTGCAT 42208 ||||||||||||| Sbjct 19880621 CAAAGATTTGCAT 19880609 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||||||| || || | ||||||||| |||| |||||||||||||||| |||| Sbjct 19775506 AAAAATTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 19775447 Query 57058 TCACCACTATACTAC 57072 ||||||||||||||| Sbjct 19775446 TCACCACTATACTAC 19775432 >seq2 Length=31686972 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| | || || |||||||| |||||||| Sbjct 3056825 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAA 3056884 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 3056885 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 3056943 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | ||||| || ||||| || || ||||| | Sbjct 3056944 TGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGA 3057003 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 3057004 CAAAGATCTGCAT 3057016 Score = 109 bits (120), Expect = 6e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || || || | || || |||||||| || ||||| Sbjct 3056270 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 3056329 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 3056330 GATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 3056388 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || || | |||||||| ||||| || || |||| Sbjct 3056389 TGTCGATGGTGTCCGAGCTC---TCAACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCT 3056445 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 3056446 TGACAAAGATCTGCAT 3056461 >seq4 Length=27574323 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || || |||||||| || || || || | || || |||||| Sbjct 24792850 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTGC 24792791 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || |||||||| ||||| ||||||||||| | ||| | | |||||||||| ||| || Sbjct 24792790 TTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTG 24792731 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 || | | | | |||||| || || || || | ||||| || ||||| || Sbjct 24792730 GCCTTCACATTGTCGATCGTGTCAGAGGACTCAACCTCCAAGGTGATCGTCTTGCCAGTA 24792671 Query 42186 AGCGTCTTTACAAAGATTTGCAT 42208 || ||||| |||||||| ||||| Sbjct 24792670 AGGGTCTTCACAAAGATCTGCAT 24792648 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| || || || || || | || || |||||||| ||||| || Sbjct 24792610 TCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAG 24792551 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | ||| | | |||||||||| ||| || || | | Sbjct 24792550 ATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTA 24792491 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||||| || || || || | || ||||| ||||| || || ||||| || Sbjct 24792490 TCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACG 24792431 Query 42198 AAGATTTGCAT 42208 || |||||||| Sbjct 24792430 AATATTTGCAT 24792420 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || || || || || || || || || | || || |||||| Sbjct 24793078 TGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGC 24793019 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || ||||| ||||| ||||||||||| | || | || |||||| ||| ||| || Sbjct 24793018 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTG 24792959 Query 42126 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 || | ||| | | | ||||| || || || || | |||||||| ||||| || Sbjct 24792958 GCCTTCA-CGTTGTCGATGGTGTCAGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGT 24792900 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || ||||| ||||| Sbjct 24792899 GAGGGTCTTCACGAAGATCTGCAT 24792876 >seq8 Length=22678724 Score = 107 bits (118), Expect = 2e-18 Identities = 143/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| ||||| ||||| || | || | || || ||||||||||| ||||| Sbjct 3985246 CTCTTTCTGAATTTTGTAGTCAGCAAGGTTGCGTCCTTCCTCGAGCTGCTTACCGGCGAA 3985305 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT--------TGT 42128 ||||| ||||||||||| | || | || |||||||||| ||| ||| || Sbjct 3985306 GATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTTACCTTCACTGC 3985365 Query 42129 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGC 42188 || | | | | |||||| || ||||| |||| ||||||| ||||| || || Sbjct 3985366 TTCACATTGTCGATGGTGTCGGATGACTCCACCTCGAGGGTGATGGACTTGCCGGTCAGA 3985425 Query 42189 GTCTTTACAAAGATTTGCAT 42208 ||||| |||||||| ||||| Sbjct 3985426 GTCTTCACAAAGATCTGCAT 3985445 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| ||||| || || || | || || |||||||| || || || Sbjct 3995728 CTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCAAA 3995787 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||| ||| ||| || || | | Sbjct 3995788 GATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACATT 3995847 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || ||||| || | ||||||| ||||| || || || || || Sbjct 3995848 GTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCAC 3995907 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 3995908 AAAGATCTGCAT 3995919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212718518080