Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq8 104 2e-17 seq5 98.7 1e-15 seq1 98.7 1e-15 seq2 87.8 2e-12 >seq6 Length=25711811 Score = 131 bits (144), Expect = 2e-25 Identities = 493/754 (65%), Gaps = 22/754 (3%) Strand=Plus/Minus Query 52092 GACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTG 52151 ||||||||| | || ||| |||||| | || |||||||||||| |||| |||||||| Sbjct 7421240 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 7421181 Query 52152 AACATTAACCTCA--TCGAG-TACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAATAC 52208 | |||||| || || | |||| || |||| | || |||||| | | Sbjct 7421180 CTCGAGAACCTCGCCTCCAGGTTCATGTC-CG--ACGTGCAGGTCGCCGAGGCTCGCGCC 7421124 Query 52209 TTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATT 52268 || || || || | ||||||| | | ||| | ||||||||| ||||| | Sbjct 7421123 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTGCTGCTC 7421064 Query 52269 GAGCAGCTG-ATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGT 52327 ||| | || || || | |||| ||| |||| | || |||| ||| Sbjct 7421063 GAG-ACCTACATCCGCGACGGCGCCGAGAAGGACCGGCTGTTCCGCGCCATCGACACCGT 7421005 Query 52328 GCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGAC-ACCGCCA 52386 ||| ||| ||| ||||| | ||||| ||| |||||||| | | | | ||| Sbjct 7421004 CCCGGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGTGGCGAGCGCTT 7420945 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 ||| ||||||| | || ||||||||| |||||||| | || || || ||| || Sbjct 7420944 CGC----CGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCT 7420889 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | ||||||||| | | || | | || | ||||| ||||| || ||| ||||| Sbjct 7420888 TCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACG 7420829 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || | || || |||||||| || |||||| ||||| || |||||| |||| ||| | Sbjct 7420828 AGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTAC--GAC-C 7420772 Query 52567 GCGTGACCGAAAAATTGGATTCGGA-CACGATCCTGAGCATGTTCAAGGAGGCGGTGGCT 52625 | | || || | || || | || | ||| || || || || || | Sbjct 7420771 TCCTCCGCGGCAAGCTCGACGAGGCGCGCGTCCGCGAG-ATCGTCGCCGACGCCGTCGAC 7420713 Query 52626 ATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAG 52685 ||||| | |||||| | | |||||| || |||| ||| | |||||||||| | Sbjct 7420712 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGAC 7420653 Query 52686 TCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA 52745 |||| || |||||||||| || || || || || || | || ||||| | || | Sbjct 7420652 CTCATGAGCCAGTACATCGAATTCGTCGCCGACCGCCTCCTCATGGCACTCGG-CTGCAA 7420594 Query 52746 -AAGTACTTCAACGCTCGC-AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803 ||| | ||||| |||| || || || || | ||| | ||| || || |||||| Sbjct 7420593 GAAGATGTACAACG-TCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCA 7420535 Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||| ||||||||||| |||||||| || Sbjct 7420534 AGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 7420501 Score = 123 bits (136), Expect = 2e-23 Identities = 250/360 (69%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||||| || ||| ||||||| | || || |||||||| || || ||| ||| Sbjct 1225258 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGAC 1225317 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCG-GACACGA-TCC 52599 || || |||||| |||| ||| | | | || || | || || | |||| ||| Sbjct 1225318 TTCGCCTGCCTCCTCTAC--GAC-CTCCTCCGCGGCAAGCTCGA--CGAGTCACGCGTCC 1225372 Query 52600 TGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGG 52659 | || || || || |||| ||||| | |||||| | | |||||| || | Sbjct 1225373 AGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCG 1225432 Query 52660 TCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATC 52719 ||| ||| | || ||||||| || |||| || ||||||||||||| || || || | Sbjct 1225433 TCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACC 1225492 Query 52720 GTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGC-AATCCGTTTGAGTT 52777 | ||| | || ||||||| || | ||| | ||||| |||| || ||||| || | Sbjct 1225493 GGCTGCTCATGGCGCTCGGGT-GCAAGAAGATGTACAACG-TCGCCAACCCGTTCGACTG 1225550 Query 52778 TATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | ||| || || |||||||||||||||| ||||||||||| |||||||| || Sbjct 1225551 GATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1225610 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || ||||| || || || || | Sbjct 23416346 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 23416287 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| |||||||| || || || || ||||| ||| || || | | Sbjct 23416286 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 23416227 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||| ||||||| || | || || || || || || || Sbjct 23416226 TTG-TCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 23416168 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 23416167 CACAAAGATCTGCAT 23416153 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| || || ||||| |||||||| || || || | | Sbjct 22963807 GACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGTCCATCCTCGAGCTGCTTGCCTGCA 22963866 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || ||||| |||||||| || || || || ||||| ||| | || | || Sbjct 22963867 AAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTC-CTGAATCTTCGCCTTCAC 22963925 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||| | ||||| ||||| | || | || || || |||| || | Sbjct 22963926 ATTG-TCGATCTTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCTGTCAAGGTCT 22963984 Query 138599 TTACAAAAATCTGCATGGCT 138618 | ||||| ||||||||| || Sbjct 22963985 TCACAAAGATCTGCATGCCT 22964004 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || ||||| || || || |||| Sbjct 23416734 GACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCG 23416675 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 23416674 AAGATGAGACGCTGCTGGTCCGGGGGGATNCCCTCCTTGTCCTGGATCTTGGCCTTCACG 23416615 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | ||||| ||||| | ||| | || || || ||||| || || Sbjct 23416614 TTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTCTTG 23416555 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 23416554 ACGAAGATCTGCAT 23416541 >seq8 Length=22678724 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || | ||| | | | |||||||| |||||||||||||| Sbjct 3995692 GCCACCACGGAGACGGAGGACAAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCAGC 3995751 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||||| || || |||| | |||| || ||||| |||||||| || Sbjct 3995752 AAGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGG 3995811 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || || || ||| || || | ||||| | | |||||||| ||||||| Sbjct 3995812 AATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGT-CGATGGTGTCGGATGACTCCA 3995870 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | | || || ||||| ||||| ||||| |||||||| Sbjct 3995871 CCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 3995919 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | ||||| || ||||| |||||||| Sbjct 3985211 CCCCCACGGAGACGGAGGACAAGATGGAGGGTGGACTCTTTCTGAATTTTGTAGTCAGCA 3985270 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | | || |||||||| || ||||||| |||| || ||||| ||||||||||| Sbjct 3985271 AGGTTGCGTCCTTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGA 3985330 Query 138508 ATACCTTCTTTGTCGGTGATTTTT--------TGTTTTA-ATTGTTCCACGGTGTCGGTC 138558 || || || ||||| ||| ||| || || | |||| || | |||||||| Sbjct 3985331 ATGCCCTCCTTGTCCTGGATCTTTACCTTCACTGCTTCACATTG-TCGATGGTGTCGGAT 3985389 Query 138559 GACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||||| || | | || || |||||||| || ||||| |||||||| Sbjct 3985390 GACTCCACCTCGAGGGTGATGGACTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 3985445 >seq5 Length=24206129 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||||| || || |||| Sbjct 3088009 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 3087950 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 3087949 AAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACG 3087890 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | ||| | || || || ||||| || || Sbjct 3087889 TTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTC 3087830 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3087829 ACGAAGATCTGCAT 3087816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| | || ||| || ||||| || || || | Sbjct 19880574 GATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCG 19880515 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| |||||||| || || || || ||||| ||| || |||| | Sbjct 19880514 AAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACA 19880455 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||| ||||| | || | || || ||||| ||||| || Sbjct 19880454 TTG-TCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTT 19880396 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 19880395 CACAAAGATCTGCAT 19880381 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||||| || || || || || |||| Sbjct 19881486 GACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCG 19881427 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || |||||||| ||||| ||| || || | | Sbjct 19881426 AAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACA 19881367 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| |||| ||| ||||| | || | || || ||||| ||||| || Sbjct 19881366 TTG-TCGATGGTATCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTT 19881308 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 19881307 GACGAAGATCTGCAT 19881293 >seq1 Length=36915442 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || ||| |||||| || || || |||| Sbjct 10946957 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCG 10947016 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 10947017 AAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACG 10947076 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | ||| | ||| || || ||||| || || Sbjct 10947077 TTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTC 10947136 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 10947137 ACGAAGATCTGCAT 10947150 >seq2 Length=31686972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| | || | || | ||||| || || || || | Sbjct 3056823 GACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCA-TCCTCCAGCTGCTTGCCAGC 3056881 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 3056882 GAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 3056941 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||||||||||| | || | || || || |||||||| || Sbjct 3056942 GTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTT 3057001 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 3057002 GACAAAGATCTGCAT 3057016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262325560640