Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 seq5 87.8 2e-12 >seq2 Length=31686972 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || || ||||| ||||| || || || Sbjct 3056787 ATGCCACCACGGAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 3056846 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| || || || ||| | || | || ||||||||||| Sbjct 3056847 GCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGG 3056906 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || |||| || | || | |||||| |||||||| Sbjct 3056907 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGACTC 3056965 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || |||||||| ||||| || ||||| || |||||| Sbjct 3056966 CACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCATC 3057017 >seq5 Length=24206129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | | | || |||| || || ||||| ||||| || ||| | ||| Sbjct 7376440 CCACCACGGAGACGGAGCGCCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAACCTGCT 7376499 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| ||| || | || || || || | |||| ||| ||||| ||||| || Sbjct 7376500 AA-GGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCGCTGCTGATCCGGGGG 7376558 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 |||||| || || || ||||| ||| ||| | || | || | ||||| || ||||| | Sbjct 7376559 AATGCCCTCCTTGTCCTGAATCTTTGCTTTCA-CGTTGTCAATTGTGTCCGACGACTCAA 7376617 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || | |||| ||||||||||| | || || ||||| |||||||| Sbjct 7376618 CCTCCAAGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 7376666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003132199520