Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08]
12 sequences; 308,272,304 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq10 596 2e-165
seq2 123 3e-23
seq8 98.7 1e-15
>seq10
Length=19274048
Score = 596 bits (660), Expect = 2e-165
Identities = 716/969 (74%), Gaps = 17/969 (2%)
Strand=Plus/Minus
Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593
|| ||| ||||| ||||||||||||||||||| ||| |||||||| |||||||| |||||
Sbjct 17611051 AGTAGCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAG 17610992
Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653
| ||||||||||| | || ||||| || || | || |||||||| | ||||| |
Sbjct 17610991 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 17610932
Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713
|| |||||||| ||||| ||||| || ||||| ||||| || |||| ||| | ||||||
Sbjct 17610931 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 17610872
Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773
|||||| || || || || ||||| || | | ||||||||| | ||||| ||||||||
Sbjct 17610871 GAACCAAATCCCTACTACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 17610812
Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833
|| ||| ||||||||||| | |||| ||||| || || || || ||
Sbjct 17610811 AAAACTAGCATATTGGAAGATTA----ACCA---------TGAGCGGCCACAATATTATA 17610765
Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893
|||||||| |||||||| || | ||||| | || || || |||||||||||
Sbjct 17610764 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 17610705
Query 7894 ACGAACCAGAGAAGAGGTTAC-AAGCGAACCATGCATCGCACTGAACAGAGAACCACCAA 7952
| | || | ||||||||| |||| |||||||||| |||||||| || ||||| || |
Sbjct 17610704 CCTGATCAAACTAGAGGTTACCAAGC-AACCATGCATAGCACTGAATAGGGAACCGCCGA 17610646
Query 7953 AGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGA 8012
| |||||||| || || | |||||| || || ||||| |||||||| |||||||| ||||
Sbjct 17610645 ATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGA 17610586
Query 8013 AGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAAC 8072
| |||| ||| ||||||| |||||||| || || | ||||||| | ||| ||||| |
Sbjct 17610585 ATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTC 17610526
Query 8073 CTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATG 8132
||||||| | ||| || | | ||| ||||||| || || ||||| ||||| || ||||
Sbjct 17610525 CTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATG 17610466
Query 8133 CTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGT 8192
| ||| ||||| ||||||||||| |||||| || |||||||||||||||||||| |
Sbjct 17610465 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATAT 17610406
Query 8193 ATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGA 8252
| | | ||| | | |||||| | | || || | ||||||| || ||||| |
Sbjct 17610405 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 17610346
Query 8253 GCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAG 8312
||||||||||| ||| || |||||||| || || || ||||| | || | || ||
Sbjct 17610345 ACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCAG 17610286
Query 8313 AAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGG 8372
||| |||||||| | ||||||||| || ||||| || || | | ||||||| || |
Sbjct 17610285 AAGTAGGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAG 17610226
Query 8373 GTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAA 8431
| ||||| || || ||||| || || ||||| ||||||| ||| |||| || || |||
Sbjct 17610225 GCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAG 17610166
Query 8432 ATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGA 8491
| || || | | | ||||| ||||||| ||||| ||||| || | || |||||
Sbjct 17610165 A-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 17610107
Query 8492 TTGTTGGTG 8500
|| | ||||
Sbjct 17610106 TTTTCGGTG 17610098
>seq2
Length=31686972
Score = 123 bits (136), Expect = 3e-23
Identities = 129/168 (77%), Gaps = 1/168 (1%)
Strand=Plus/Plus
Query 7555 GTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGCACGTC 7614
|| |||||||||||| |||||||| |||||||| ||||| |||||||||| | ||
Sbjct 14358804 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 14358863
Query 7615 TGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAACC 7674
||||| || | | || |||||||| | ||||| | || |||||||| ||||| ||
Sbjct 14358864 AGCCCAAGTATAAATAACGCGACCTTGGCTATCAACTACAGA-TGGTTGAAATTGAACCC 14358922
Query 7675 GTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGAT 7722
|| || ||||| ||||| || |||| ||| | |||||||||||| ||
Sbjct 14358923 ATTTAGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCAAAT 14358970
Score = 93.3 bits (102), Expect = 5e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 6659 TTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACA 6718
|| || || || || || |||||||| || |||| || | ||||| | || || ||
Sbjct 31659839 TTTTCCACGGTTGCCCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCAGCAACT 31659780
Query 6719 CCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAG 6778
|||||||||||||| ||||| | |||||| || || || || || | |||||| | |||
Sbjct 31659779 CCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAAT 31659720
Query 6779 CGGAATATCGCTGC 6792
|| |||||||||||
Sbjct 31659719 CGAAATATCGCTGC 31659706
>seq8
Length=22678724
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593
|||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 21568354 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 21568413
Query 7594 ACCAGCACGGTTGA 7607
| |||| ||||||
Sbjct 21568414 ATTAGCATGGTTGA 21568427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622124706681280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |