Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq10 596 2e-165 seq2 123 3e-23 seq8 98.7 1e-15 >seq10 Length=19274048 Score = 596 bits (660), Expect = 2e-165 Identities = 716/969 (74%), Gaps = 17/969 (2%) Strand=Plus/Minus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 || ||| ||||| ||||||||||||||||||| ||| |||||||| |||||||| ||||| Sbjct 17611051 AGTAGCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAG 17610992 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 | ||||||||||| | || ||||| || || | || |||||||| | ||||| | Sbjct 17610991 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 17610932 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| ||||| ||||| || ||||| ||||| || |||| ||| | |||||| Sbjct 17610931 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 17610872 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 |||||| || || || || ||||| || | | ||||||||| | ||||| |||||||| Sbjct 17610871 GAACCAAATCCCTACTACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 17610812 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 || ||| ||||||||||| | |||| ||||| || || || || || Sbjct 17610811 AAAACTAGCATATTGGAAGATTA----ACCA---------TGAGCGGCCACAATATTATA 17610765 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893 |||||||| |||||||| || | ||||| | || || || ||||||||||| Sbjct 17610764 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 17610705 Query 7894 ACGAACCAGAGAAGAGGTTAC-AAGCGAACCATGCATCGCACTGAACAGAGAACCACCAA 7952 | | || | ||||||||| |||| |||||||||| |||||||| || ||||| || | Sbjct 17610704 CCTGATCAAACTAGAGGTTACCAAGC-AACCATGCATAGCACTGAATAGGGAACCGCCGA 17610646 Query 7953 AGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGA 8012 | |||||||| || || | |||||| || || ||||| |||||||| |||||||| |||| Sbjct 17610645 ATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGA 17610586 Query 8013 AGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAAC 8072 | |||| ||| ||||||| |||||||| || || | ||||||| | ||| ||||| | Sbjct 17610585 ATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTC 17610526 Query 8073 CTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATG 8132 ||||||| | ||| || | | ||| ||||||| || || ||||| ||||| || |||| Sbjct 17610525 CTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATG 17610466 Query 8133 CTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGT 8192 | ||| ||||| ||||||||||| |||||| || |||||||||||||||||||| | Sbjct 17610465 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATAT 17610406 Query 8193 ATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGA 8252 | | | ||| | | |||||| | | || || | ||||||| || ||||| | Sbjct 17610405 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 17610346 Query 8253 GCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAG 8312 ||||||||||| ||| || |||||||| || || || ||||| | || | || || Sbjct 17610345 ACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCAG 17610286 Query 8313 AAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGG 8372 ||| |||||||| | ||||||||| || ||||| || || | | ||||||| || | Sbjct 17610285 AAGTAGGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAG 17610226 Query 8373 GTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAA 8431 | ||||| || || ||||| || || ||||| ||||||| ||| |||| || || ||| Sbjct 17610225 GCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAG 17610166 Query 8432 ATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGA 8491 | || || | | | ||||| ||||||| ||||| ||||| || | || ||||| Sbjct 17610165 A-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 17610107 Query 8492 TTGTTGGTG 8500 || | |||| Sbjct 17610106 TTTTCGGTG 17610098 >seq2 Length=31686972 Score = 123 bits (136), Expect = 3e-23 Identities = 129/168 (77%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 7555 GTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGCACGTC 7614 || |||||||||||| |||||||| |||||||| ||||| |||||||||| | || Sbjct 14358804 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 14358863 Query 7615 TGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAACC 7674 ||||| || | | || |||||||| | ||||| | || |||||||| ||||| || Sbjct 14358864 AGCCCAAGTATAAATAACGCGACCTTGGCTATCAACTACAGA-TGGTTGAAATTGAACCC 14358922 Query 7675 GTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGAT 7722 || || ||||| ||||| || |||| ||| | |||||||||||| || Sbjct 14358923 ATTTAGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCAAAT 14358970 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 6659 TTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACA 6718 || || || || || || |||||||| || |||| || | ||||| | || || || Sbjct 31659839 TTTTCCACGGTTGCCCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCAGCAACT 31659780 Query 6719 CCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAG 6778 |||||||||||||| ||||| | |||||| || || || || || | |||||| | ||| Sbjct 31659779 CCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAAT 31659720 Query 6779 CGGAATATCGCTGC 6792 || ||||||||||| Sbjct 31659719 CGAAATATCGCTGC 31659706 >seq8 Length=22678724 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 21568354 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 21568413 Query 7594 ACCAGCACGGTTGA 7607 | |||| |||||| Sbjct 21568414 ATTAGCATGGTTGA 21568427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622124706681280