Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 210 3e-49 >seq6 Length=25711811 Score = 210 bits (232), Expect = 3e-49 Identities = 495/739 (67%), Gaps = 20/739 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 7420515 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTT 7420574 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | ||||| ||| || | | ||| || || ||||| Sbjct 7420575 GGCGACGTTGTACATCTTCTTGCAGCCGAGTGCCATGAGGAGGCGGTCGGCGACGAATTC 7420634 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||||| || | Sbjct 7420635 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 7420694 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | |||||| |||| || ||||| || |||| || |||| ||| ||| || | | Sbjct 7420695 GACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGCGCCTCGT 7420753 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||||| | | |||| | | |||||||| || |||||||||||||| |||| Sbjct 7420754 CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCT 7420810 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| |||| Sbjct 7420811 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTTCTTGA 7420870 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | || ||||||||||| ||| || || || Sbjct 7420871 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCG 7420929 Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| | ||| | || ||| | | | | | |||| | ||||||| || || Sbjct 7420930 ACGAGGCGCTCGGC----GAAGCGCTCGCCACCGTCGATCCAGCGCATGGCCCAGTCGGC 7420985 Query 160126 CTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| ||||||| | | |||| |||| |||| | ||||| ||| Sbjct 7420986 C----TTGCGGCGCACGGCCGGGACGGTGTCGATGGCGCGGAACAGCCGGTCCTTCTCGG 7421041 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | || ||| || | | |||| ||||||||| || | ||| | || |||| Sbjct 7421042 CGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCGGAGTGGATGTTCTCGA 7421101 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| ||| |||||| ||||| |||||| || |||||| Sbjct 7421102 TGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGCACGTCGGACATGAACC 7421161 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | | || || | || | ||||||| ||| || ||||| || | |||||| | Sbjct 7421162 TGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGG 7421221 Query 160362 AGATGAAATGTCTCTCGTC 160380 ||||||| || | |||||| Sbjct 7421222 AGATGAAGTGGCGCTCGTC 7421240 Score = 179 bits (198), Expect = 6e-40 Identities = 266/375 (71%), Gaps = 9/375 (2%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 1225596 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTT 1225537 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | ||||| ||| |||| || ||| || || || || Sbjct 1225536 GGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCGGTCGGCGACGAACTC 1225477 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| |||| | ||| ||||| | ||| ||||||||||| || | Sbjct 1225476 GATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGACGGGGAGCGCGTCGCA 1225417 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | |||||| |||| || || || || |||| || |||| | ||| ||| |||| Sbjct 1225416 GACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCTGGACGCGTGACTCGT- 1225358 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 | ||||||| | | |||| | | |||||||| || ||||||||||| || || Sbjct 1225357 --CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGACC 1225303 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| || ||||||| ||||||||| | | ||||||||||||||| || ||| || Sbjct 1225302 CTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCGCGCTTCTT 1225243 Query 160006 GAGCCAAAAAATGGC 160020 |||||| || ||||| Sbjct 1225242 GAGCCAGAAGATGGC 1225228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155080726720