Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3 125 3e-23 seq4 93.3 2e-13 seq5 87.8 7e-12 >seq3 Length=33311619 Score = 125 bits (138), Expect = 3e-23 Identities = 247/365 (68%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 |||||||||||||| |||||||||| || ||| || | || ||| || | || Sbjct 31523262 GAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAGATCGCTGAAGCTTACCTAGGG 31523321 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 || | || | |||| || | |||||||| || || ||||||||| | || |||| Sbjct 31523322 TCAACTGTGAAGAATGCTGTTGTCACTGTTCCTGCATACTTCAATGATTCCCAGAGGCAG 31523381 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 ||||||||||||||||| |||||| ||| | |||||| | || || || ||||| || Sbjct 31523382 GCAACTAAAGATGCAGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCA 31523441 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC------AGAAGaaaaa 451480 ||||| ||||| | || ||||| || | || || | || | || || Sbjct 31523442 ACAGCTGCTGCAATTGCTTATGGTCTTGACAA---GAAGGCGACTAGTGTTGGTGAGAAG 31523498 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || | | | ||||| ||||||| || ||| |||| || | ||| | ||||| Sbjct 31523499 AACGTGCTCATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCCCTCCTTACCATTGAG 31523558 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 || || | ||||| || || ||||| |||||| ||||| || || || || || || Sbjct 31523559 GAGGGTATTTTTGAGGTGAAAGCAACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTT 31523618 Query 451601 GATAA 451605 || || Sbjct 31523619 GACAA 31523623 Score = 96.9 bits (106), Expect = 1e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||| | || || ||||| || ||||| ||| || |||| | ||| | | || Sbjct 644302 GTTTTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGAAAATCTGTTTCCAAGGCT 644243 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| ||||||||||||||||| || || || || || || ||||| || Sbjct 644242 GTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGT 644183 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | || ||||| | |||| | |||| || |||||||| || || |||||||| | Sbjct 644182 CGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTGTCT 644123 Query 451445 TATGGA 451450 |||||| Sbjct 644122 TATGGA 644117 >seq4 Length=27574323 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || ||||| || || || || | || ||||| || || Sbjct 24792192 ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCC 24792251 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || ||||| || ||||| || || ||||| || || Sbjct 24792252 GATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAG 24792311 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || ||| | || || || ||||| ||||| | ||| | ||||||||||| Sbjct 24792312 CAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAAC 24792371 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 24792372 ATCCAGAAGGA 24792382 >seq5 Length=24206129 Score = 87.8 bits (96), Expect = 7e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || || || || ||||||||||| ||||| || ||| || |||||||| Sbjct 10321784 GCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCGACAAAAGATGCT 10321843 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| || | ||||| || || || || || ||||| ||||| || | Sbjct 10321844 GGCCGGATTGCTGGGTTGGAAGTTCTCCGCATCATAAACGAGCCTACTGCAGCATCTTTG 10321903 Query 451442 GCATATGG 451449 |||||||| Sbjct 10321904 GCATATGG 10321911 Score = 87.8 bits (96), Expect = 7e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || || || || ||||||||||| ||||| || ||| || |||||||| Sbjct 10336164 GCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCGACAAAAGATGCT 10336223 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| || | ||||| || || || || || ||||| ||||| || | Sbjct 10336224 GGCCGGATTGCTGGGTTGGAAGTTCTCCGCATCATAAACGAGCCTACTGCAGCATCTTTG 10336283 Query 451442 GCATATGG 451449 |||||||| Sbjct 10336284 GCATATGG 10336291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975718096233296