Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3 237 1e-56 seq11 114 1e-19 seq12 105 5e-17 seq2 98.7 8e-15 >seq3 Length=33311619 Score = 237 bits (262), Expect = 1e-56 Identities = 704/1076 (65%), Gaps = 20/1076 (2%) Strand=Plus/Minus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 |||| || || |||||| |||||| || ||||| ||||| || | ||||| ||| Sbjct 31524403 GTTGTCTTGTCTTCGGCAGACACATTCAGGATACCGTTGGCGTCAATGTCAAAGCAGACA 31524344 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 || |||||||| || || | ||||| ||||| || || | |||| | || || Sbjct 31524343 GTGATCTGAGGGACTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGG 31524284 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 ||| || || | || | | | |||||||| | | || || || ||| Sbjct 31524283 AGATTGTTGTCCCTGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGC 31524224 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT 517482 || ||||| || || || | || || ||| || || |||||| || ||||| || Sbjct 31524223 TGGTTATCGGAGTAGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCT 31524165 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 || | ||||| | ||| || ||||| || | ||||||||| || ||||| || Sbjct 31524164 TGGGATGAGCACTGTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCAC 31524105 Query 517543 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 517602 ||||| || | || || || | || || | | ||| ||| ||||| || || Sbjct 31524104 ATCAAGGAGAAGAAGATCCTGCACCTTCTCGTTCCCCTCTCCACTAAGGATAGCAGCCTG 31524045 Query 517603 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTA 517660 | |||||||| ||||| |||||||||||||| |||| | || || |||| || Sbjct 31524044 GACGGCAGCACCGTATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTC 31523987 Query 517661 CCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACT 517720 |||||||| |||| ||||| || ||| |||| || | || ||| || ||||| Sbjct 31523986 CCATTGAAGAAATCCTGCAGAAGCTGCTGAACCCTAGGGATTCTAGTTGAACCACCAACA 31523927 Query 517721 AATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC 517779 | |||| ||||| || ||| | || |||| |||| |||| | || || || Sbjct 31523926 AGGACAACATCATGGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCAC 31523868 Query 517780 GGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG 517839 || || | || || || | ||| ||| || || || | ||||| || | Sbjct 31523867 AGGCTCCATACATTTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGAT 31523808 Query 517840 AGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGA 517899 ||| || |||||| || || || | ||||||| |||||| |||||||| | | Sbjct 31523807 GGTGGAATAGAAATCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGT 31523748 Query 517900 AGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC 517959 || || || | | || || | |||||||| ||| || || || | || || | | Sbjct 31523747 GGAGGAGAGGGTCCTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG- 31523689 Query 517960 TGATTGATTC--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA 518017 | || | | ||| | |||| ||||||||||| |||| ||| | | || Sbjct 31523688 -GGTTCCCGCTGATATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACC 31523630 Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 || || || ||||| || || || || | | ||| | || | || ||| | || | Sbjct 31523629 AGGCGGTTGTCAAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCA 31523570 Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAA 518137 |||| || || |||| | | || | |||||| || |||||||| | |||||| Sbjct 31523569 AAAATACCCTCCTCAATGGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAA 31523510 Query 518138 ATAAGTACATTCATTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGC 518190 || || || ||| | || | ||| || || ||||||||||| |||| || Sbjct 31523509 ATGAGCACGTTCTTCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGC 31523451 Query 518191 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 518250 |||||| ||||| ||||| || || | || |||||||||||| ||||| |||||||| Sbjct 31523450 AGCAGCTGTTGGCTCATTGATGATACGCATAACATTAAGACCCGCAATAACACCTGCATC 31523391 Query 518251 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 |||||| || || || || ||||| || || |||||||||||||| | ||| |||| Sbjct 31523390 TTTAGTTGCCTGCCTCTGGGAATCATTGAAGTATGCAGGAACAGTGACAACAGCAT 31523335 >seq11 Length=23014695 Score = 114 bits (126), Expect = 1e-19 Identities = 223/328 (68%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044 || |||||||| |||| ||| | | || | || || |||||||||||||| || Sbjct 22829424 TTCCTCTTGAATTCTTGTACAAAGTGGTTGACCATGCGGTTGTCAAAATCTTCACCACCA 22829365 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 | | || | || | || || | || | || | || || |||| | | || Sbjct 22829364 AGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGG 22829305 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--- 518161 | |||||| ||| ||||| || | ||||| || || |||||| | || | Sbjct 22829304 GAAACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTG 22829245 Query 518162 -TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 ||| || || ||||||||||| |||| ||| ||||||||||| || || || || | | Sbjct 22829244 GTGGCCTTCTTGTCAAGACCATAGGCAATAGCTGCAGCAGTTGGCTCGTTGATGATGCGC 22829185 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | ||||| ||||||||||| ||| ||||| || ||||| || || || || || || Sbjct 22829184 ATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTG 22829125 Query 518279 AAATATGCAGGAACAGTAATAACGGCAT 518306 || || ||||||||||| | ||| |||| Sbjct 22829124 AAGTAGGCAGGAACAGTGACAACAGCAT 22829097 >seq12 Length=20550741 Score = 105 bits (116), Expect = 5e-17 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 6137834 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCGTTGTTTT---TC 6137781 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| | |||||||| |||||||| ||||| | | ||| | Sbjct 6137780 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGTTCATTTATAATGCGGAGAACTTCC 6137721 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | || ||||| | ||| |||||||| || ||| || ||||| || || || |||||| Sbjct 6137720 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTGAAGTATGCA 6137661 Query 518288 GGAACAGTAA 518297 |||||||||| Sbjct 6137660 GGAACAGTAA 6137651 >seq2 Length=31686972 Score = 98.7 bits (108), Expect = 8e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 28811683 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 28811742 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 28811743 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 28811802 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 || ||||| | | || |||||||| |||| Sbjct 28811803 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 28811836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821804520472