Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 105 8e-18 >seq6 Length=25711811 Score = 105 bits (116), Expect = 8e-18 Identities = 278/412 (67%), Gaps = 13/412 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || || ||||| || || | || || || || ||||| || ||| Sbjct 5997051 CGGTCGAAGCGCCCCGGCCGGAGCAGCGCCGCGTCGAGGATCTCCGGCCGGTTGGTGGCG 5997110 Query 11563 GCAATGACTACAATGCCA--GTCTCATT-GTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || || || || | ||| ||| | | |||| |||||||| || ||||| |||||| Sbjct 5997111 GCGATCACGACGACGCCGCCGTCGCCGCCGCCGAACCCGTCCATCTCGGTGAGCAGCTGG 5997170 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGG-GCATACCACCT-GCCGAACGCTTCTTAC 11677 || | |||||| || | ||| ||||| | || | | || |||| |||| | | Sbjct 5997171 TTCAGCGTCTGCTCCCTCTCGTCGTTCCCGCCGCCGATCCCCGCGCCG--CGCTGCCGCC 5997228 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG--CCTGTTC 11735 | || ||||| ||||| |||||||| |||| ||||| | | || | || ||||| | Sbjct 5997229 CCACGGCGTCTATCTCGTCGATGAAGACGAGGCACGGCGCGCTCGC-CTTGGCCCTGT-C 5997286 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || || || || ||| ||| || || || ||||||||||| | ||| | | || Sbjct 5997287 GAACAGGTCGCGCACCCGCGACGCGCCGACGCCGACGAACATCTCGATGAA-CTCGGAGC 5997345 Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 | ||| || | |||||| || | ||| || ||||| || || || || |||| Sbjct 5997346 CGGACAGCGAGAAGAAGGGCACGCCGGCCTCGCCGGCGATCGCCTTGGCCAGCAGCGTCT 5997405 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | ||||| || || | || | || || |||| ||||||| | ||||| Sbjct 5997406 TCCCCGTCCCCGGCGGGCCGACCAGCAGCACGCCCTTGGGGATCCTCGCACC 5997457 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 7420801 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCC 7420860 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||| ||||| || ||| Sbjct 7420861 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAG 7420920 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| || ||||| || || | ||| || ||||| ||| | ||||| Sbjct 7420921 GCGAAGGCGACGAGGCGCTCGGCGAAGCGCTCGCCAC-CGTCGATCCAGCGCATGGCCCA 7420979 Query 119687 GTTGGCCTTACG 119698 || |||||| || Sbjct 7420980 GTCGGCCTTGCG 7420991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975911653600