Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 >seq6 Length=25711811 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 7420800 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 7420859 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 7420860 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 7420919 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 7420920 GGCGAAGGCGACGAGGCGCTCGGCGAAG 7420947 Score = 118 bits (130), Expect = 1e-21 Identities = 273/406 (67%), Gaps = 4/406 (1%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | || || ||||| ||||| | || || | |||| | || |||||| Sbjct 25371697 CGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGCCTGTTTGTCGCG 25371756 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||| |||| | ||| | | |||| ||||||||||| ||||| || |||||| Sbjct 25371757 GCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTCAAGAGCTGGTTA 25371816 Query 9312 ATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370 || || || |||| |||||||| | | | | | ||||||| || ||| | || || Sbjct 25371817 ATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACGCTGCCTCCCGAC 25371875 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||||||| |||||||||||||| || || || || | ||| | || || || Sbjct 25371876 GGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGCCTTCTCGAACAG 25371935 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 || | ||||| ||| || ||||| || |||| ||| || || | | |||| || Sbjct 25371936 GTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTCGGACGCGGCGCA 25371995 Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 || ||| || || | || || || | ||| || || || || ||||| || || Sbjct 25371996 GGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGTGTCTTCCCGGT 25372055 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 || ||| || |||| | |||| ||| | || |||||||| || Sbjct 25372056 TCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 25372100 Score = 104 bits (114), Expect = 3e-17 Identities = 229/340 (67%), Gaps = 14/340 (4%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 22733007 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 22733066 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||||||| |||| | || || | ||| || |||| ||||||||| | Sbjct 22733067 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 22733120 Query 9344 ACCACCAGCAC-TG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 ||||||| || || | |||| | || || |||||||| ||||||| || || || Sbjct 22733121 ACCACCAATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTAT 22733180 Query 9398 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || ||| || || | | |||||||| ||||||| ||| || || || Sbjct 22733181 GCAAGGAGCATTCTCCTTTGCCTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCC 22733240 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9516 ||||||||||||||||| | | | | | || | || || || ||| || ||| | Sbjct 22733241 GACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAACGGCACACCAGCTTCCC 22733299 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | ||||| || ||| || | ||||||||| || || || Sbjct 22733300 CTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 22733339 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 1225311 GTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCC 1225252 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAA 117386 |||||||| | ||| | || ||||||||||| || ||||| Sbjct 1225251 GCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAA 1225210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980711502880