Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq10 551 7e-152 seq2 111 2e-19 seq9 87.8 2e-12 seq8 84.2 3e-11 >seq10 Length=19274048 Score = 551 bits (610), Expect = 7e-152 Identities = 702/964 (73%), Gaps = 17/964 (2%) Strand=Plus/Plus Query 179769 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCA 179828 ||| | ||||| || || | || ||||| || ||| ||||||| || || | ||| | Sbjct 17610099 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 17610158 Query 179829 GCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCAT 179887 |||||| |||| || || |||||||||||||||| || || || || || ||||| || Sbjct 17610159 GCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 17610217 Query 179888 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 179947 ||||| || || ||||||| | | || || ||||| || ||||||||| | |||| Sbjct 17610218 TCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGT 17610277 Query 179948 TCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGA 180007 |||| |||| || | || | ||||| || || || |||||||| ||||| |||| Sbjct 17610278 TCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 17610337 Query 180008 CGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCAT 180067 |||||| | || || || ||||||| | || | || | |||||| | |||| | Sbjct 17610338 TGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 17610397 Query 180068 CTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGAT 180127 | || |||||||||||||||||||| || || |||||||||| || ||||| Sbjct 17610398 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 17610457 Query 180128 CTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTT 180186 ||| || |||||||| ||||| || || || || ||||||| ||| | | || ||| Sbjct 17610458 -TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTA 17610516 Query 180187 TCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACA 180246 | |||||||| |||| ||| | ||||| | || || ||||| || ||||||| | Sbjct 17610517 TTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 17610576 Query 180247 TGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAG 180306 || |||| ||||| |||||||| |||||||| ||||| || || |||||| | || |||| Sbjct 17610577 TGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 17610636 Query 180307 CAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCAC 180366 | ||||| ||||||||||| || ||| || ||||| |||| |||| |||||| Sbjct 17610637 CTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTT 17610696 Query 180367 TGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAG 180426 || | | ||||||||||||| || || || | ||||||| ||||||||||| | Sbjct 17610697 TGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGG 17610756 Query 180427 AAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATG 180486 ||||||| || || || || || || ||||| || |||||||| |||| Sbjct 17610757 AAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATG 17610803 Query 180487 CATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCA 180546 | || |||||||| ||||| | ||||||||| ||| || |||||||| || || | Sbjct 17610804 CTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGA 17610863 Query 180547 TCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCA 180606 | ||||||||||| | || | || || ||||| ||||| || ||||| ||||| |||| Sbjct 17610864 TTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCA 17610923 Query 180607 ACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACC 180666 |||| || | ||||| | |||||||| || | || |||||||| || | |||||| Sbjct 17610924 ACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACC 17610983 Query 180667 GCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACC 180726 | ||| ||| ||||||||||| |||||||| ||| |||||||||||||||| || |||| Sbjct 17610984 GTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACC 17611043 Query 180727 TGGC 180730 | || Sbjct 17611044 TAGC 17611047 >seq2 Length=31686972 Score = 111 bits (122), Expect = 2e-19 Identities = 126/168 (75%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 180546 ATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 180605 || ||||||||||| | || | || || ||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 180606 AACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAAC 180665 ||||| || | ||||| | |||||||| || | | |||||||| || | ||||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 180666 CGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 180713 || || ||| | ||||||||| |||||||| |||||||||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 181907 GCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCC 181966 || ||||| || || ||| | |||||| |||| || ||||||||||||||| | || || Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 181967 TTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGT 182026 || ||||||||||| |||||||| | | || | || | || | || ||||| || Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGG 31659825 Query 182027 GTGACCGTGGAGAA 182040 | |||||||| || Sbjct 31659826 GCAACCGTGGAAAA 31659839 >seq9 Length=19219615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 3549466 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 3549525 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 3549526 CCTACTTGGGGAG 3549538 >seq8 Length=22678724 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 180661 TCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCAC 180720 |||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||||| | Sbjct 21568427 TCAACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 21568368 Query 180721 TTGACCTGGCAGCT 180734 | ||||| || ||| Sbjct 21568367 TAGACCTAGCTGCT 21568354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610396708440480