Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq10 430 1e-115 >seq10 Length=19274048 Score = 430 bits (476), Expect = 1e-115 Identities = 664/945 (70%), Gaps = 17/945 (2%) Strand=Plus/Plus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| | ||||| || |||| | || ||| | | ||| || || Sbjct 17610118 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATT 17610176 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 | || ||||| || || ||||| || ||||| || || || | || || || | ||| Sbjct 17610177 ATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGT 17610236 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||||| | || || ||||| || ||||||||| | ||||||| | || || || Sbjct 17610237 TCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTACTTCTGCTGCGGTC 17610296 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 ||| | ||||| |||||||| |||||||| ||| |||||||||| ||||| || ||||| Sbjct 17610297 GGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGC 17610356 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| || | | | | |||||| | ||||| | | || ||||| | Sbjct 17610357 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGT 17610416 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | | || |||||||||||||| ||||||||| || || Sbjct 17610417 GAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 17610476 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 || || | ||||| ||||| ||||| | ||||| ||||||| || |||| | Sbjct 17610477 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTTT 17610536 Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 ||||||||||| |||| || || |||||||||||||||||| | || ||||| |||||| Sbjct 17610537 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 17610596 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980 |||||||| || |||||||| || |||||| ||| ||||| || | ||||| || || Sbjct 17610597 CATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 17610656 Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040 ||||| || |||||||||| | || || || | | ||||| ||||| || || Sbjct 17610657 CTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAA 17610716 Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100 | || || || | ||||| | || || ||||| ||||| || || || || || Sbjct 17610717 AACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTG 17610776 Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160 || || || ||||| |||||||| |||||| || |||||||| | Sbjct 17610777 GCCGCTCATGGTTA-------------ATCTTCCAATATGCTAGTTTTAACAACTCTCGT 17610823 Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220 | ||||||||||| | | | || ||||| ||| | | ||||| || || | ||| Sbjct 17610824 TCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGT 17610883 Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT-GC 170279 || | || ||||| ||||| | || || ||||| || |||||||| || |||||| || Sbjct 17610884 ATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGC 17610943 Query 170280 TAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGA 170339 || || | | || |||| |||| | | ||| | || || | |||||||| Sbjct 17610944 CAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGA 17611002 Query 170340 AGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 ||| ||||| ||| | |||| ||||||||||| ||||||||||| Sbjct 17611003 AGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGC 17611047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212713118080