Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08]
12 sequences; 308,272,304 total letters
Query= NC_015281.1
Length=179563
Score E
Sequences producing significant alignments: (Bits) Value
seq10 493 1e-134
>seq10
Length=19274048
Score = 493 bits (546), Expect = 1e-134
Identities = 686/961 (71%), Gaps = 15/961 (2%)
Strand=Plus/Plus
Query 167890 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 167949
||||| || || | || ||||| || || ||||||| || || | ||| | ||||||
Sbjct 17610105 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 17610164
Query 167950 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 168008
||||| || || |||||||| ||||||| || || || || || || || || |||||
Sbjct 17610165 -TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 17610223
Query 168009 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTC 168068
|| || ||||||| | | || || ||||| || ||||||||| | |||| ||| |
Sbjct 17610224 GCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTAC 17610283
Query 168069 TTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTG 168128
|||| ||| | ||| | ||||| || || || |||||||| ||||| | ||||||||
Sbjct 17610284 TTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 17610343
Query 168129 GTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGC 168188
||| || || || ||||||| | ||| | || | |||||| | | ||| | |
Sbjct 17610344 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 17610403
Query 168189 ATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGT 168248
|| ||||| ||||| |||||||| | ||| | ||||||||||| ||||| |||
Sbjct 17610404 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 17610463
Query 168249 TGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCA 168308
|||||| || || || || || || || | ||| || ||| | | || ||| | |||||
Sbjct 17610464 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCA 17610523
Query 168309 AGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGT 168368
||| ||||||| ||||| ||||| | ||||| || || || ||||||| ||| | ||
Sbjct 17610524 AGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 17610583
Query 168369 CTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGT 168428
||||| || ||||| || || || |||||||| || || ||| | || || ||||| ||
Sbjct 17610584 ATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 17610643
Query 168429 ATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAG 168488
||| || || | || ||||||||||| || | ||||| || ||| | | | ||
Sbjct 17610644 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCAG 17610703
Query 168489 AGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAAC 168548
|| || ||||||| |||||| || | ||||||| || || ||||| ||||| ||
Sbjct 17610704 GGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGAC 17610763
Query 168549 ATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 168608
|| || || || |||||||||||||| ||||||||||| ||| ||
Sbjct 17610764 TTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATGCTAGTTT 17610810
Query 168609 CAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 168668
|||||||| || || || ||||||||| | | ||| |||||||| || || || |||||
Sbjct 17610811 TAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGTT 17610870
Query 168669 CACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 168728
||| || | || | || ||||| ||||| || ||||| ||||| |||||||| ||
Sbjct 17610871 CACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATC 17610930
Query 168729 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGG 168788
| ||||| | || ||||| || | || || ||||| ||| | | ||||| |||
Sbjct 17610931 TGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 17610990
Query 168789 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGC 168848
||| ||||||||||| ||||| || ||| | || ||||||||||| || || || ||| |
Sbjct 17610991 TCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGCTAC 17611050
Query 168849 T 168849
|
Sbjct 17611051 T 17611051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574473513828960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |