Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq10 493 1e-134 >seq10 Length=19274048 Score = 493 bits (546), Expect = 1e-134 Identities = 686/961 (71%), Gaps = 15/961 (2%) Strand=Plus/Plus Query 167890 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 167949 ||||| || || | || ||||| || || ||||||| || || | ||| | |||||| Sbjct 17610105 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 17610164 Query 167950 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 168008 ||||| || || |||||||| ||||||| || || || || || || || || ||||| Sbjct 17610165 -TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 17610223 Query 168009 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTC 168068 || || ||||||| | | || || ||||| || ||||||||| | |||| ||| | Sbjct 17610224 GCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTAC 17610283 Query 168069 TTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTG 168128 |||| ||| | ||| | ||||| || || || |||||||| ||||| | |||||||| Sbjct 17610284 TTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 17610343 Query 168129 GTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGC 168188 ||| || || || ||||||| | ||| | || | |||||| | | ||| | | Sbjct 17610344 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 17610403 Query 168189 ATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGT 168248 || ||||| ||||| |||||||| | ||| | ||||||||||| ||||| ||| Sbjct 17610404 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 17610463 Query 168249 TGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCA 168308 |||||| || || || || || || || | ||| || ||| | | || ||| | ||||| Sbjct 17610464 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCA 17610523 Query 168309 AGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGT 168368 ||| ||||||| ||||| ||||| | ||||| || || || ||||||| ||| | || Sbjct 17610524 AGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 17610583 Query 168369 CTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGT 168428 ||||| || ||||| || || || |||||||| || || ||| | || || ||||| || Sbjct 17610584 ATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 17610643 Query 168429 ATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAG 168488 ||| || || | || ||||||||||| || | ||||| || ||| | | | || Sbjct 17610644 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCAG 17610703 Query 168489 AGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAAC 168548 || || ||||||| |||||| || | ||||||| || || ||||| ||||| || Sbjct 17610704 GGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGAC 17610763 Query 168549 ATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 168608 || || || || |||||||||||||| ||||||||||| ||| || Sbjct 17610764 TTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATGCTAGTTT 17610810 Query 168609 CAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 168668 |||||||| || || || ||||||||| | | ||| |||||||| || || || ||||| Sbjct 17610811 TAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGTT 17610870 Query 168669 CACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 168728 ||| || | || | || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 17610871 CACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATC 17610930 Query 168729 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGG 168788 | ||||| | || ||||| || | || || ||||| ||| | | ||||| ||| Sbjct 17610931 TGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 17610990 Query 168789 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGC 168848 ||| ||||||||||| ||||| || ||| | || ||||||||||| || || || ||| | Sbjct 17610991 TCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGCTAC 17611050 Query 168849 T 168849 | Sbjct 17611051 T 17611051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574473513828960