Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq10 592 2e-164 seq8 84.2 2e-11 >seq10 Length=19274048 Score = 592 bits (656), Expect = 2e-164 Identities = 710/962 (74%), Gaps = 17/962 (2%) Strand=Plus/Plus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 ||||| || || |||| ||||| || ||| ||||||||||||| || ||| | ||||| Sbjct 17610105 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 17610163 Query 163871 CATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTG 163929 ||||| || || |||||||| ||||||| || || || || || ||||||||||||| Sbjct 17610164 T-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTG 17610222 Query 163930 AACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCT 163989 | |||||| | ||||| | | || || ||||| || ||||||||| | ||||||| Sbjct 17610223 AGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTA 17610282 Query 163990 CGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAAT 164049 | || ||| | || | ||||| ||||| ||||||||||| ||||| ||||||| | Sbjct 17610283 CTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGT 17610342 Query 164050 GGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATG 164109 || | ||||| || ||||||| | || | || | |||||| | | ||| | | Sbjct 17610343 GGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 17610402 Query 164110 CATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTG 164169 || ||||||||||||||||||||| || |||||| |||||||||||||||||| || Sbjct 17610403 GTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTG 17610462 Query 164170 TTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 164229 |||| || || || || |||||||| || | || || ||| || | || ||| | |||| Sbjct 17610463 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTC 17610522 Query 164230 AAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGG 164289 |||| |||| ||| | ||||| | || || ||||| || ||||||| ||| | | Sbjct 17610523 AAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTG 17610582 Query 164290 TGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCG 164349 | ||||| |||||||| |||||||| ||||| || || || ||| | || || ||||| | Sbjct 17610583 TATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTG 17610642 Query 164350 TATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC 164409 |||| |||||||| || |||||||| ||||| |||| |||| || ||| || | Sbjct 17610643 TATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCA 17610702 Query 164410 GTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAA 164469 | |||||||| |||| || || || | ||||||| ||||||||||| ||||| | Sbjct 17610703 GGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGA 17610762 Query 164470 CATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCAT 164529 | || || ||||| |||||||| ||||| ||||||||||| ||| | Sbjct 17610763 CTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATGCTAGTT 17610809 Query 164530 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGT 164589 | |||||||| ||||| || ||||||||| | | ||| |||||||| || || || |||| Sbjct 17610810 TTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGT 17610869 Query 164590 TCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 164649 |||| || | ||| || || ||||| ||||| || ||||| ||||| |||||||| | Sbjct 17610870 TCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAAT 17610929 Query 164650 CCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTG 164709 | | | ||| | || ||||| || | || |||||||| || | ||||||| ||| Sbjct 17610930 CTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTA 17610989 Query 164710 GTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTG 164769 ||| ||||||||||| |||||||| ||| | ||||||||||||||||| || || ||| Sbjct 17610990 ATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGCTA 17611049 Query 164770 CT 164771 || Sbjct 17611050 CT 17611051 >seq8 Length=22678724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 164698 TCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTC 164757 |||||| ||| ||| ||||||||||| |||||||| ||||| |||||||||||||||| Sbjct 21568427 TCAACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 21568368 Query 164758 TGGATCTCGCTGCT 164771 | || || |||||| Sbjct 21568367 TAGACCTAGCTGCT 21568354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556924716461280