Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq10 511 5e-140 >seq10 Length=19274048 Score = 511 bits (566), Expect = 5e-140 Identities = 696/971 (72%), Gaps = 15/971 (2%) Strand=Plus/Plus Query 168504 TAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTT 168563 |||| ||||| | ||| | ||||| |||| ||||| ||||| || |||||||| | Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCT 17610150 Query 168564 TATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATC 168622 |||| || ||| | | ||| || ||| | || || || ||||| || || || ||||| Sbjct 17610151 TATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATT 17610209 Query 168623 GACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGT 168682 || || || | || ||||| | ||| || || | || |||||||| || ||||| ||| Sbjct 17610210 GATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGT 17610269 Query 168683 GCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCT 168742 | ||||||| |||| || |||| | ||||| ||||||||||||||||| || Sbjct 17610270 ACCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 17610329 Query 168743 ACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTA 168802 | | |||||||||||||| ||||| |||||||| || | | | | |||||| || Sbjct 17610330 TCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 17610389 Query 168803 ATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGA 168862 | || | || || |||||| | |||||||| | | | | || |||||| | Sbjct 17610390 CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGT 17610449 Query 168863 CCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTA 168922 |||||||| |||||| |||||||| || || | || || ||| || ||| | | Sbjct 17610450 CCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATT 17610509 Query 168923 TACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTC 168982 ||||| ||||||| || ||||| ||||||||||||| ||||||| ||||| || ||| Sbjct 17610510 TACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTC 17610569 Query 168983 AACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCA 169042 ||||| ||| | |||||||| |||||||| ||||| ||||||||||| || || ||| | Sbjct 17610570 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 17610629 Query 169043 GGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACA 169102 || ||||| ||| | ||||| || || |||||| || |||||||||| | ||||| Sbjct 17610630 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACC 17610689 Query 169103 TCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGT 169162 ||| | | ||||| || || ||||| | |||||| || | ||||||| || ||| Sbjct 17610690 TCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGT 17610749 Query 169163 CAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTC 169222 ||||| ||||| || ||||||||||| || || ||||| ||||||||| Sbjct 17610750 CAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTTC 17610796 Query 169223 CAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTT 169282 || ||||| ||||| |||||||| | | | ||||||||| | | | | || || Sbjct 17610797 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTA 17610856 Query 169283 GTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTT 169342 ||| | | ||||| || || | ||||| |||| ||||| ||||| | |||||||| Sbjct 17610857 GTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTC 17610916 Query 169343 AACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTA 169402 || || |||||||| || || ||| | ||| | ||| ||| |||| ||| | Sbjct 17610917 AATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATC 17610976 Query 169403 CTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCA 169462 | ||| | || || |||||||||||||||||||| || ||| | |||||||||||||| Sbjct 17610977 ATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCT 17611036 Query 169463 CTAGACTTAGC 169473 |||||| |||| Sbjct 17611037 CTAGACCTAGC 17611047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564441515333760