Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq10 414 1e-110 seq6 89.7 6e-13 seq1 89.7 6e-13 >seq10 Length=19274048 Score = 414 bits (458), Expect = 1e-110 Identities = 664/954 (70%), Gaps = 15/954 (2%) Strand=Plus/Plus Query 171854 TTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCT 171913 |||| |||| ||||| ||||| | |||||||| || | || ||| | | | Sbjct 17610112 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTAT 17610171 Query 171914 TCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTG 171973 | || | || ||||| || || ||||| || ||||| || || || | || || ||| Sbjct 17610172 TTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTT 17610231 Query 171974 CGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACG 172033 | |||||||| | || || ||||| || ||||||||| | ||||||| | || | Sbjct 17610232 CTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTACTTCTGCTG 17610291 Query 172034 CAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACA 172093 | | || | ||||| ||||| || |||||||| ||| | || ||||| ||||| |||| Sbjct 17610292 CGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 17610351 Query 172094 ATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGG 172153 |||| ||||||||| || | | | | |||||| | | ||| | | || |||| Sbjct 17610352 ATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 17610411 Query 172154 GAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATT 172213 | | |||||||||| | | | | |||||| | || ||||| ||| ||||||| Sbjct 17610412 GTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 17610471 Query 172214 CAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCAT 172273 |||| ||||| |||| || |||||| ||| | | || || | ||||| || | Sbjct 17610472 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTT 17610531 Query 172274 TCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAG 172333 ||| |||||||||||| |||| || || ||||| |||||||||||| | || ||||| | Sbjct 17610532 TCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGG 17610591 Query 172334 CAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAG 172393 ||||||||||||| || |||||||| || |||||| ||| ||||| || | || || | Sbjct 17610592 CAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 17610651 Query 172394 GATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAA 172453 | || ||||| || ||||| |||| || || || ||| | | ||||| || || | Sbjct 17610652 GTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCAGGGAAACCA 17610711 Query 172454 CTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACA 172513 ||||| ||||| || | || |||| || || ||||| ||||| || || || | Sbjct 17610712 CTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATA 17610771 Query 172514 TAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACT 172573 | || || || || ||||| |||||||| |||||| ||| ||||||| Sbjct 17610772 TTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATGCTAGTTTTAACAACT 17610818 Query 172574 CAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTA 172633 | | | | ||||||||| | | | || ||||| ||| | | ||||| || || Sbjct 17610819 CTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTT 17610878 Query 172634 TGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAG 172693 | ||||| |||| ||||| ||||| || ||||| ||||| ||||||||||| || || | Sbjct 17610879 TAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTG 17610938 Query 172694 AT-GCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGT 172752 || || || ||| || || ||| |||| ||| | | ||| | || || || ||| Sbjct 17610939 ATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGT 17610997 Query 172753 ATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCT 172806 |||||||| ||||| ||| | |||| ||||||||||| ||||||| ||| || Sbjct 17610998 ATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGCTACT 17611051 >seq6 Length=25711811 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || || Sbjct 19801960 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 19801901 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| | |||||||||||||| Sbjct 19801900 TGGTCCTGGAATGGGTCCTATTGGTGT 19801874 >seq1 Length=36915442 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || || Sbjct 24515355 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 24515414 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| | |||||||||||||| Sbjct 24515415 TGGTCCTGGAATGGGTCCTATTGGTGT 24515441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051111792320