Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq10 520 1e-142 seq2 116 4e-21 >seq10 Length=19274048 Score = 520 bits (576), Expect = 1e-142 Identities = 700/972 (72%), Gaps = 17/972 (2%) Strand=Plus/Plus Query 162398 TAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTC 162457 ||||| ||| | ||||| || || | || ||||| || || ||||||| || || Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCT 17610150 Query 162458 TGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATC 162516 | ||| | ||||| ||||| || || |||||||| ||||||| || || || || || Sbjct 17610151 TATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATT 17610209 Query 162517 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 162576 || || || ||||| || || ||||||| | | || || ||||| || ||||||||| Sbjct 17610210 GATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGT 17610269 Query 162577 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 162636 | ||||||| |||| || | || | ||||| || || || |||||||| ||| Sbjct 17610270 ACCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 17610329 Query 162637 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTG 162696 || ||||||||||| | || || || ||||||| | || | || | |||||| | Sbjct 17610330 TCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 17610389 Query 162697 ATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGT 162756 | || | | || ||||| ||||| |||||||| || |||||| ||||||||| Sbjct 17610390 CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGT 17610449 Query 162757 CCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGT 162815 || ||||| ||| || ||||| || || ||||||||||| || | || || ||| || | Sbjct 17610450 CCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGAT 17610508 Query 162816 CTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATT 162875 || ||| | |||||||| ||||| ||| | ||||| || || || |||||| || Sbjct 17610509 TTACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTT 17610568 Query 162876 CAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTT 162935 ||||| ||| |||| ||||| |||||||| ||||| || |||||||| || |||||||| Sbjct 17610569 CAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTT 17610628 Query 162936 GGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTAC 162995 ||||| || ||||| ||||| ||||| || |||||||| ||||| |||| ||||| || Sbjct 17610629 AGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAAC 17610688 Query 162996 ATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGG 163055 ||| | || | || || ||||||| || || || | ||||||| || || Sbjct 17610689 CTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGG 17610748 Query 163056 TCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTT 163115 |||||| |||||||| || || || || || || |||||||| ||||| Sbjct 17610749 TCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTT 17610795 Query 163116 CCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGT 163175 ||||||||| || |||||||| ||||| || ||||||||| | | ||| |||||||| Sbjct 17610796 CCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGT 17610855 Query 163176 TGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTT 163235 || || || |||||||| || | || | || ||||| ||||| || ||||| || Sbjct 17610856 AGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATT 17610915 Query 163236 CAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGT 163295 ||| |||||||| || | ||||| | || ||||| || | || || ||||| || | Sbjct 17610916 CAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATAT 17610975 Query 163296 TCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCC 163355 | |||||||| | | ||||||||||| |||||||| || |||||||||||||||| Sbjct 17610976 CATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCC 17611035 Query 163356 ACTTGACCTGGC 163367 || ||||| || Sbjct 17611036 TCTAGACCTAGC 17611047 >seq2 Length=31686972 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 164104 GCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCC 164163 ||||| || || ||||| || | ||| | |||||||||||||| ||||| |||||||| Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 164164 TTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGA 164223 || |||||||||||||||||||| || |||||| || |||||| |||||||| || Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGG 31659825 Query 164224 GTCACAGTTGAAAA 164237 | || || ||||| Sbjct 31659826 GCAACCGTGGAAAA 31659839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557583916362400