Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq10 558 4e-154 seq8 98.7 1e-15 seq2 87.8 2e-12 >seq10 Length=19274048 Score = 558 bits (618), Expect = 4e-154 Identities = 702/973 (72%), Gaps = 15/973 (2%) Strand=Plus/Plus Query 167103 ACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTG 167162 || ||||| | |||||||| || | || ||||| || ||| ||||||||||||| || Sbjct 17610093 ACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTA 17610152 Query 167163 CTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGA 167221 | | |||| | ||||| || || ||||||||| ||| ||| ||||| || || || || Sbjct 17610153 TTGACCGCAA-CTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGA 17610211 Query 167222 TGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGC 167281 |||||| || || || ||| ||||||| | | || || ||||| || ||||||||| | Sbjct 17610212 TGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTAC 17610271 Query 167282 AGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAC 167341 |||||||| ||||| ||| | || | ||||| || || || |||||||| ||| | Sbjct 17610272 CATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATC 17610331 Query 167342 CCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGAT 167401 | || |||||||| |||||||| ||||||| | || | ||| | |||||| | | Sbjct 17610332 TGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACT 17610391 Query 167402 TGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCC 167461 ||| | | ||||||||||||||||||||||| || |||||| ||||||||||| Sbjct 17610392 TGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCC 17610451 Query 167462 CTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTA 167521 ||||| ||||||||| || ||||| || || || || ||||||| ||| | | || Sbjct 17610452 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 17610511 Query 167522 TCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAA 167581 ||| | |||||||| ||||| ||| | |||||| | || || |||||||| ||||| Sbjct 17610512 CCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAA 17610571 Query 167582 CTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGG 167641 || ||| |||| ||||| |||||||| |||||||| ||||| || || || ||| | || Sbjct 17610572 CTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGG 17610631 Query 167642 CGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTC 167701 || ||||| |||||||||||||| || |||||||| ||||| |||| |||| ||||| Sbjct 17610632 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTC 17610691 Query 167702 TTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCA 167761 | || | | |||||||| |||| || || || | ||||||| || ||||| Sbjct 17610692 TAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCA 17610751 Query 167762 GGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCA 167821 || |||||||| ||||| || || || ||||||||||| |||||||| Sbjct 17610752 AGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCA 17610798 Query 167822 ATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGT 167881 ||| || || |||||||| || || | ||||||||||||| || |||||||| || Sbjct 17610799 ATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGT 17610858 Query 167882 TGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTTTCAA 167941 || || |||| ||||| || ||||| ||||| Sbjct 17610859 AGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAA 17610918 Query 167942 CTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGCT 168001 |||||||| ||| | ||||||| ||| ||| | ||||||||| || | | Sbjct 17610919 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 17610978 Query 168002 CAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCT 168061 |||||||||| ||| ||||||||||| |||||||| ||| ||||||||||||||||||| Sbjct 17610979 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCT 17611038 Query 168062 CGACCTTGCTGCT 168074 ||||| ||| || Sbjct 17611039 AGACCTAGCTACT 17611051 >seq8 Length=22678724 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 168001 TCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTC 168060 |||||| |||| ||| ||||||||||| |||||||| |||||||||||||||||||||| Sbjct 21568427 TCAACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 21568368 Query 168061 TCGACCTTGCTGCT 168074 | ||||| |||||| Sbjct 21568367 TAGACCTAGCTGCT 21568354 >seq2 Length=31686972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 168967 CAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCAT 169026 |||| || || |||||| | |||||| | |||||||| ||||| ||||| |||| |||| Sbjct 31659707 CAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCAT 31659766 Query 169027 TTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGG 169084 ||||||||||||| || || || | || || | || |||| | || |||||||| Sbjct 31659767 TTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 31659824 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981 ||||| || || || ||||| |||||||| ||| | ||||||| ||| ||| | Sbjct 14358934 TTCAATCTAAATGGGTTCAATTTCAACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATT 14358876 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 ||||||||| || | |||||||||| ||| | ||||||||| |||||||| ||| Sbjct 14358875 TATACTTGGGCTGATATCATCAACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGT 14358816 Query 168042 AATGCTCACAAC 168053 ||||||||| || Sbjct 14358815 AATGCTCACCAC 14358804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560607915908800