Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq10 542 3e-149 seq2 87.8 2e-12 >seq10 Length=19274048 Score = 542 bits (600), Expect = 3e-149 Identities = 704/970 (73%), Gaps = 21/970 (2%) Strand=Plus/Plus Query 181815 ACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCG 181874 ||| | || ||||| || | || ||||||||||| |||||||||| || | ||| | Sbjct 17610099 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 17610158 Query 181875 GCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTAT 181933 ||||| ||||| || || | || ||| | || || ||||| || ||||| || ||||| Sbjct 17610159 GCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 17610217 Query 181934 CCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 181993 || || || || ||||||| | | || || ||||| || ||||||||| | |||| Sbjct 17610218 TCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTGT 17610277 Query 181994 CCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGA 182053 || | || || | || | ||||| |||||||| ||||||||||| || |||| Sbjct 17610278 TCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 17610337 Query 182054 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCAT 182113 ||||||| | || || || ||||||| | || ||||| | |||||| | | || | Sbjct 17610338 TGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--T 17610395 Query 182114 CTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTG 182170 || || | | ||||| |||||||||||||| || ||| | ||||||||||| || Sbjct 17610396 GTA-GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTG 17610454 Query 182171 GATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCC 182230 ||| ||| ||||| || ||||| || || || || ||||||| ||||| | || || Sbjct 17610455 GATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCC 17610514 Query 182231 TTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTA 182290 | | |||||||| |||| |||| ||||| | ||||| || || || ||||||| Sbjct 17610515 TATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTT 17610574 Query 182291 TATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGT 182350 |||| | || ||||| || ||||| ||||| ||||||||||| || |||||||| ||||| Sbjct 17610575 TATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGT 17610634 Query 182351 AGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTC 182410 ||| ||||||||||| ||||| || || ||||| ||||| |||| ||||| || ||| Sbjct 17610635 AGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAG 17610694 Query 182411 ACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGA 182470 | || | || || ||||| | || || || | ||||||| || |||||||| Sbjct 17610695 TTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGA 17610754 Query 182471 AGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATA 182530 |||||||| ||||| || || || || ||||| || ||||||||||| Sbjct 17610755 GGAAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTTCCAATA 17610801 Query 182531 CGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGG 182590 || || |||||||| ||||| || ||||||||| | | ||| |||||||| || || Sbjct 17610802 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGG 17610861 Query 182591 AATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTT 182650 || |||||||| || | ||| | || ||||| ||||| || ||||| ||||| || Sbjct 17610862 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTT 17610921 Query 182651 CAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAA 182710 |||||| || | ||||| | || ||||| || |||| |||||||| ||| | | || Sbjct 17610922 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 17610981 Query 182711 CCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGA 182770 ||||||| ||||||||||||||| ||||| || ||| | || ||||||||||| ||||| Sbjct 17610982 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGA 17611041 Query 182771 TCTTGCTGCT 182780 || ||| || Sbjct 17611042 CCTAGCTACT 17611051 >seq2 Length=31686972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 183662 TAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACC 183721 ||||||| || ||| ||||| | | ||| | || || || || || |||||||| |||| Sbjct 31659704 TAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACC 31659763 Query 183722 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATG 183781 | || |||||||||||||||||||| || |||| | || || || | ||||| |||| Sbjct 31659764 CATTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATG 31659823 Query 183782 G 183782 | Sbjct 31659824 G 31659824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611695908245600