Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq10 632 2e-176 seq2 105 8e-18 >seq10 Length=19274048 Score = 632 bits (700), Expect = 2e-176 Identities = 721/968 (74%), Gaps = 15/968 (2%) Strand=Plus/Plus Query 164784 CACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGC 164843 |||| | ||||||||||| | || ||||| |||||| | |||||||| || | | Sbjct 17610098 CACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 17610157 Query 164844 CGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTA 164902 ||| || | ||| ||||||| || ||||||||||| || || || || |||||||||| Sbjct 17610158 CGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTA 17610216 Query 164903 TTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCG 164962 ||||||| ||||| | |||||| || | ||||| ||||| || ||||||||| | | | Sbjct 17610217 TTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTACCATTG 17610276 Query 164963 TTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGG 165022 |||| ||||| || ||||| | ||||| || || ||||||||||||||| | | | Sbjct 17610277 TTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTG 17610336 Query 165023 ATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTG 165082 |||| ||||| ||||| || |||||||| || | |||| | |||||| | | |||| Sbjct 17610337 ATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 17610396 Query 165083 TAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGA 165142 ||||||| || ||||||||||||||||||||| || ||| || |||||||||||||||| Sbjct 17610397 TAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 17610456 Query 165143 TTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTT 165202 || || |||||| || ||||| || |||||| | || |||||| || | || ||| Sbjct 17610457 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTA 17610516 Query 165203 TCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 165262 | |||||||| ||||||| ||||||||||||| | || || ||||||||||| |||| || Sbjct 17610517 TTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 17610576 Query 165263 TGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTG 165322 || | || ||||| ||||| |||||||| ||||||||||| || |||||| | || || | Sbjct 17610577 TGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 17610636 Query 165323 CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCAC 165382 |||| |||||||| || || || ||| |||||||||||| | | || || || Sbjct 17610637 CTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTT 17610696 Query 165383 TCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAG 165442 | || | || || ||||||| || | || | ||||| | ||||| ||||| | Sbjct 17610697 TGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGG 17610756 Query 165443 AAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACG 165502 ||||||| ||||| || || || || || || || || |||||||| | Sbjct 17610757 AAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCAATATG 17610803 Query 165503 CATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTA 165562 | || ||||| || ||||| | ||||||||| | | || ||||||||||| || | Sbjct 17610804 CTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGA 17610863 Query 165563 TCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCA 165622 | |||||||||||| | ||| |||| || ||||| ||||| || ||||| ||||| |||| Sbjct 17610864 TTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCA 17610923 Query 165623 ACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACC 165682 |||| ||| | |||||||| || | || |||||||||||| | | |||| Sbjct 17610924 ACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACC 17610983 Query 165683 GTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACC 165742 ||||| ||| ||||||||||| ||||| || ||| | |||||||||||||| || |||| Sbjct 17610984 GTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACC 17611043 Query 165743 TCGCTGCT 165750 | ||| || Sbjct 17611044 TAGCTACT 17611051 >seq2 Length=31686972 Score = 105 bits (116), Expect = 8e-18 Identities = 125/168 (74%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 165562 ATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTC 165621 || |||||||||||| | ||| |||| || ||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 165622 AACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAAC 165681 ||||| ||| | |||||||| || | || |||||||||||| | | ||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 165682 CGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAAC 165729 ||||| ||| | ||||||||| ||||| || ||||| |||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563660715450880