Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq10 475 4e-129 >seq10 Length=19274048 Score = 475 bits (526), Expect = 4e-129 Identities = 688/974 (71%), Gaps = 13/974 (1%) Strand=Plus/Plus Query 169703 TAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTC 169762 |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCT 17610150 Query 169763 TATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCG 169822 |||| | ||| | | ||||| | || |||||||| || || || || || || | Sbjct 17610151 TATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTG 17610210 Query 169823 ATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTG 169882 |||| || | || ||||| | ||||| || | || || ||||| || ||||||||| Sbjct 17610211 ATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTA 17610270 Query 169883 CAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAA 169942 | ||||||| |||| || |||| | ||||| || || ||||||||||| ||| Sbjct 17610271 CCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCAT 17610330 Query 169943 CTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTA 170002 || | ||||||||||| || || || ||||||||| | || || | | |||||| | Sbjct 17610331 CTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTAC 17610390 Query 170003 TCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTC 170062 | || | || || |||||| | |||||||||| | |||| | |||||||||| Sbjct 17610391 TTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTC 17610450 Query 170063 CTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGT 170122 ||||||| ||| |||||||| ||||| || |||| || ||||| ||||| | | Sbjct 17610451 CTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTT 17610510 Query 170123 ATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTA 170182 | ||| | ||||| ||| ||||| || || |||||| |||| || || ||||| || | Sbjct 17610511 ACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCA 17610570 Query 170183 ACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAG 170242 |||| ||| | |||||||| |||||||| ||||| |||||||| ||||| || ||| || Sbjct 17610571 ACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAG 17610630 Query 170243 GGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACAT 170302 | || |||||| | ||||| || | || ||| || ||||| |||| | ||||| | Sbjct 17610631 GTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCT 17610690 Query 170303 CTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGAC 170362 || | | ||||| || || || || ||||| || || | || |||| ||| || | Sbjct 17610691 CTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTC 17610750 Query 170363 AAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCC 170422 |||| ||||| || || || ||||| || || ||||| || ||||||| Sbjct 17610751 AAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCC 17610797 Query 170423 AATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAG 170482 |||||||||| |||||||| |||| | | ||||||||| | | | | | ||||||| Sbjct 17610798 AATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAG 17610857 Query 170483 TATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTA 170542 || | || ||||| ||| | | |||||| | || ||||| || || || || ||||| | Sbjct 17610858 TAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCA 17610917 Query 170543 ACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTC 170602 | |||||||| || | || ||| | ||| || || ||| ||||| || | Sbjct 17610918 ATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCA 17610977 Query 170603 TTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCAC 170662 | ||| | || || || ||||||||||||||||| || ||| |||| ||||||||||| | Sbjct 17610978 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTC 17611037 Query 170663 TTGACTTGGCAACT 170676 | ||| | || ||| Sbjct 17611038 TAGACCTAGCTACT 17611051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582847912572800