Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5 116 2e-21 seq6 111 1e-19 seq4 107 1e-18 seq2 104 2e-17 seq1 100 2e-16 seq8 89.7 3e-13 >seq5 Length=24206129 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| ||||| | | || ||| | ||||| ||| || ||||| ||||| ||||| | Sbjct 19881065 TTCCACCCCTTAGGCGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 19881006 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | | |||| |||||||| || |||||||| || || || ||||||||| | | Sbjct 19881005 CGAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGGTCTGGGG 19880946 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| |||||| || ||| | |||| || | ||||| Sbjct 19880945 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCTGATGACTCAA 19880886 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||| || || || || |||||||||||||||||||| Sbjct 19880885 CCTCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 19880837 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| | || |||| || ||||| || || || || Sbjct 19880572 TTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAA 19880513 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||||||||| ||||| || || Sbjct 19880512 GATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATT 19880453 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || || |||||| || | ||||||||| || || |||||||||||||| Sbjct 19880452 GTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCAC 19880393 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 19880392 AAAGATCTGCAT 19880381 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| ||| | || | ||||| ||| |||||||||||||| ||||||| Sbjct 7376896 CCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGCC 7376955 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT-TAGTCGTTGCTGGTCTTGCGG 34873 | | | || |||| || ||||| || || || || || || || |||||||| | || Sbjct 7376956 AAGGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAAGACGATGCTGGTCAAGGGG 7377015 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | |||||||| || ||||| || ||| | |||| || || |||||| Sbjct 7377016 GATACCCTCCTTATCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCTGAGGACTCAAC 7377075 Query 34934 ATCGACGGTTAT-GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || ||| |||| || | |||||||||||||||||||| Sbjct 7377076 CTCCAAAGTGATGGGTCTTTCTTGTCAAGGTCTTCACAAAGATCTGCAT 7377124 Score = 95.1 bits (104), Expect = 8e-15 Identities = 158/229 (69%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||| | | | || | ||| | ||| |||||||||||||| || || | Sbjct 7377124 TTCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCTG 7377183 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | ||| | || || || || || || ||||| || || || ||||||| | | Sbjct 7377184 CGAGGGTGCGTCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTTAGGTG 7377243 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| |||||| ||||| | |||| ||| || ||||| Sbjct 7377244 GAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGACTCAA 7377303 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||||| || || ||||| |||||||||||||||||||| Sbjct 7377304 C-------CTTATGGTATTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 7377345 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||| | | | ||| | ||||| ||| || ||||| ||||| ||||| | Sbjct 19880837 TTCCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 19880778 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | | |||| || ||||| || || ||||| || || || |||||||| | | Sbjct 19880777 CAAGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGG 19880718 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||||||||| ||||| || ||| | || | ||| | ||||| Sbjct 19880717 GAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAA 19880658 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || || || || || | ||||| |||||||| ||||| Sbjct 19880657 CCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 19880609 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| ||||| | |||| | || |||| ||| Sbjct 19881273 ACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCC 19881214 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || |||| |||||||| | || | |||||||| || Sbjct 19881213 AGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 19881154 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | || | || | |||||| || | ||| || || || Sbjct 19881153 ATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATAGTCTTG 19881094 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||||||||| || || |||||||| Sbjct 19881093 CCAGTGAGAGTCTTGACGAAAATCTGCAT 19881065 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| || ||||| || ||||| || Sbjct 3088006 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 3087947 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||| |||||||| ||||| || ||| Sbjct 3087946 ATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTG 3087887 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || || | || ||||| || ||||| || |||||||| Sbjct 3087886 TCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACG 3087827 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 3087826 AAGATCTGCATCTT 3087813 >seq6 Length=25711811 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || |||| ||| | || |||| || || || || || ||||| Sbjct 22964038 TCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAG 22964097 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | ||||||||||| |||||| || || Sbjct 22964098 ATGAGACGTTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTG 22964157 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || |||||| |||| ||| ||||| || || ||||| ||||||||| Sbjct 22964158 TCAATTGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACA 22964217 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 22964218 AAGATCTGCAT 22964228 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| || ||||| || || || || Sbjct 23416343 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAG 23416284 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| ||||| Sbjct 23416283 ATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 23416224 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || |||||| |||| ||| ||||| || || ||||| ||||||||| Sbjct 23416223 TCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACA 23416164 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 23416163 AAGATCTGCAT 23416153 Score = 102 bits (112), Expect = 5e-17 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | ||| | ||||| ||||| ||| || ||||| ||||| ||||| | Sbjct 23416767 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 23416708 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| |||||||| || ||||| || || || || |||||||| | || Sbjct 23416707 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 23416648 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| || ||| | |||| || || ||| || Sbjct 23416647 ATNCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACC 23416588 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || ||||| || || || || ||||| || |||||||||||| Sbjct 23416587 TCAAGCGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATA 23416540 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| || |||| |||| | || |||| || Sbjct 23416977 ACCAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTCA 23416918 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 23416917 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 23416858 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | || | || | |||||| || | ||| ||||| || Sbjct 23416857 ATCTTCGCCTTCACGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTAATGGTCTTG 23416798 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 23416797 CCAGTCAGGGTCTTCACGAAGATCTGCAT 23416769 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||||||||| || || | || | ||| |||| || Sbjct 22963792 ACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGTCCATCCTCG 22963851 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| | Sbjct 22963852 AGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 22963911 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || || || | ||||| || || ||| || || | || ||||| Sbjct 22963912 ATCTTCGCCTTCAC--AT--TGTCGATCTTGTCCGAGGACTCGACCTCAAGAGTGATGGT 22963967 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || | |||||||||||||||||||| Sbjct 22963968 CTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 22964000 >seq4 Length=27574323 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | |||| | || |||| || ||||| || ||||| || Sbjct 24793066 TCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 24793007 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | |||||||| || ||||| || ||| Sbjct 24793006 ATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTG 24792947 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || |||||| || | || ||||| || || ||||| |||||||| Sbjct 24792946 TCGATGGTGTCAGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACG 24792887 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 24792886 AAGATCTGCATA 24792875 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || | |||| | || |||| || ||||| || || || || Sbjct 24792838 TCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 24792779 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| || || Sbjct 24792778 ATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTG 24792719 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| || |||||| || | ||| || || || || || || ||||||||| Sbjct 24792718 TCGATCGTGTCAGAGGACTCAACCTCCAAGGTGATCGTCTTGCCAGTAAGGGTCTTCACA 24792659 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 24792658 AAGATCTGCATA 24792647 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| |||||||| |||| || | || |||| || ||||| || || || || Sbjct 24792382 TCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAG 24792323 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||||||| | || | ||||||||||| |||||| || || Sbjct 24792322 ATAAGGCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTG 24792263 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || |||||| || | ||| ||||| || || ||||| ||||| || Sbjct 24792262 TCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACG 24792203 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 24792202 AATATCTGCAT 24792192 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || ||||| ||||| | |||| | || |||| || ||||| || || ||||| Sbjct 24792611 TTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAA 24792552 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||||||| | || | ||||||||||| ||||| || || | Sbjct 24792551 GATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCAC--A 24792494 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | ||||||| || || ||| || || | ||| ||||| || || ||||| |||| Sbjct 24792493 T--TATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTGCCGGTGAGGGTCT 24792436 Query 34966 TCACAAAGATCTGCAT 34981 |||| || || ||||| Sbjct 24792435 TCACGAATATTTGCAT 24792420 >seq2 Length=31686972 Score = 104 bits (114), Expect = 2e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| || ||||| || ||||| || Sbjct 3056271 TCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 3056330 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| ||||| Sbjct 3056331 ATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC---- 3056386 Query 34911 GCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| || |||||| || | ||| ||||| || || ||||| ||||| Sbjct 3056387 GTTGTCGATGGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTT 3056446 Query 34967 CACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 3056447 GACAAAGATCTGCATA 3056462 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| | ||| | ||| |||| ||| Sbjct 3056025 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCATCCTCC 3056084 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||||||| | || | |||||||||||| Sbjct 3056085 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 3056144 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || || || |||| || ||| | |||||| || | || ||||| Sbjct 3056145 ATCTTGGCCTTCAC--AT--TATCAATGGTGTCAGAGCTCTCAACCTCCAAAGTGATGGT 3056200 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | |||||||| |||||||||||| Sbjct 3056201 CTTCCCAGTCAAGGTCTTCACGAAGATCTGCATA 3056234 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | |||| | | |||| |||||||| || || || || Sbjct 3056826 TCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAG 3056885 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 3056886 ATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 3056945 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | ||| || || || || || |||||||| ||| Sbjct 3056946 TCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACA 3057005 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3057006 AAGATCTGCAT 3057016 >seq1 Length=36915442 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || |||||||| || ||||| || Sbjct 21234714 TCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAG 21234655 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||||||| | |||| |||||| | Sbjct 21234654 ATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACG--T 21234597 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| || | | ||| || || | || ||||| || ||||| || ||||||| Sbjct 21234596 TCTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCA 21234537 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 21234536 CGAAGATCTGCAT 21234524 Score = 98.7 bits (108), Expect = 6e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || | || |||||||| || ||||| || Sbjct 10946960 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAG 10947019 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||||||| |||||| || ||| Sbjct 10947020 ATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTG 10947079 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || || | || || || || ||||| || |||||||| Sbjct 10947080 TCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACG 10947139 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 10947140 AAGATCTGCATCTT 10947153 >seq8 Length=22678724 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| | |||| | ||| | || || ||||| || |||||||| Sbjct 3995729 TCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCAAAG 3995788 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||| || |||||| || || || Sbjct 3995789 ATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCAC--AT 3995846 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | ||| || || | ||| |||| || || || || || || Sbjct 3995847 --TGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTT 3995904 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 3995905 CACAAAGATCTGCAT 3995919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633552522336