Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq10 572 2e-158 seq2 104 3e-17 >seq10 Length=19274048 Score = 572 bits (634), Expect = 2e-158 Identities = 694/945 (73%), Gaps = 15/945 (2%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || | |||||||||||| |||||||||||||| ||||| || | Sbjct 17611035 GGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAGATTAGCACGGTTGATG 17610976 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||||||||| || | | || ||||| || Sbjct 17610975 ATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTG 17610916 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || ||||| || ||||| || |||| ||| | ||||| |||||||| || || Sbjct 17610915 AATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACT 17610856 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||| ||||||| ||||| | ||||||| ||||| || |||||| ||| Sbjct 17610855 ACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGG 17610796 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| || || ||||| || |||||||||||||| || || |||||| Sbjct 17610795 AAGAT-------------TAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGA 17610749 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || ||||||| | || || | ||||| || ||||| | ||| | | ||| Sbjct 17610748 CCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGATCAAACTAGAG 17610689 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | |||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 17610688 GTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCT 17610629 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| |||||||||||||||||||| || |||||||| |||| ||| ||||| Sbjct 17610628 AACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTG 17610569 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || | ||||| |||||| ||||| ||||| || | ||| || Sbjct 17610568 AAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCTTGACCAATAGGGTAA 17610509 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 17610508 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 17610449 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | |||||||| ||||||||||| ||| | | |||||| Sbjct 17610448 CGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 17610389 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| || ||||| |||| ||| || || | | | Sbjct 17610388 AAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGAT 17610329 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || ||||||||||| || || || || | || | ||| ||| | ||||| | || | Sbjct 17610328 GCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCAGAAGTAGGAACAATGGTA 17610269 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 ||||| || || ||||||||||| | | |||||||| || |||||||| ||||| ||| Sbjct 17610268 CCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCA 17610209 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| | | ||| || || || || ||||| ||| || | | || Sbjct 17610208 ATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA-AGTTGCGGTCAATAA 17610150 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTT 84928 || || ||||| | | |||||||| |||| || | |||||| Sbjct 17610149 GGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 17610105 >seq2 Length=31686972 Score = 104 bits (114), Expect = 3e-17 Identities = 122/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 83994 TGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCC 84053 || || |||||||||||||| ||||||||| |||| ||||| || | | ||| ||| Sbjct 14358808 TGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATCAGCC 14358867 Query 84054 CAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTC 84113 || |||| | ||| || ||||||||| || | | || ||||| || || ||||| Sbjct 14358868 CAAGTATAAATAACGCGACCTTGGCTATCAACTACA-GATGGTTGAAATTGAACCCATTT 14358926 Query 84114 AGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAAT 84157 ||||| || ||||| || |||| ||| | ||||| |||||||| Sbjct 14358927 AGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCAAAT 14358970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571273514308960