Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-20 seq12 114 1e-19 seq2 107 2e-17 seq5 100 2e-15 seq6 87.8 1e-11 >seq3 Length=33311619 Score = 116 bits (128), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || ||||| || | ||| |||||||||| |||||| | || || ||| | | || Sbjct 31523247 AAGCAATTCTCTGCCGAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAGATCGCT 31523306 Query 550370 AGTGCTTTTGTTGG-TCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 |||| | || |||| || | | |||| || | ||||| || ||||| || || Sbjct 31523307 GAAGCTTACCTAGGGTCAACT-GTGAAGAATGCTGTTGTCACTGTTCCTGCATACTTCAA 31523365 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| || || | || || ||||||||||| || |||||| || ||||||||| | || Sbjct 31523366 TGATTCCCAGAGGCAGGCAACTAAAGATGCAGGTGTTATTGCGGGTCTTAATGTTATGCG 31523425 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| |||||||| || || ||||||||| |||| ||||| ||||| || Sbjct 31523426 TATCATCAATGAGCCAACAGCTGCTGCAATTGCTTATGGTCTTGACAA 31523473 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | || ||||| ||||| || |||||| Sbjct 644245 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 644186 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || || ||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 644185 GGTCGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTG 644126 Query 550520 GCATATGGA 550528 | |||||| Sbjct 644125 TCTTATGGA 644117 >seq12 Length=20550741 Score = 114 bits (126), Expect = 1e-19 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | ||||| || ||||| || ||||||||||| | ||| | Sbjct 6137633 AAATTACCAAAGCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAA 6137692 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||||||||||||||| ||| | | ||||| || ||||| |||||||| |||| Sbjct 6137693 CAAAAGATGCTGGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAACCGACTG 6137752 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 |||| | ||||| ||||| |||| || Sbjct 6137753 CTGCATCCCTTGCTTATGGTTTTGAGAA 6137780 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 |||| || || || || || || ||||||| | || ||||| || || ||| | | Sbjct 17036389 TAACAGTTCCTGCTTACTTCAACTACTCACAGAGGCAGGCTACCAAGGACGCTAGGGTCA 17036448 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 ||||||| || ||||| | ||||| |||||||| |||||||||||||| |||| |||| Sbjct 17036449 TTGCTGGCCTCAATGTCATGCGTATCATCAATGAGCCTACTGCTGCTGCCATTGCCTATG 17036508 Query 550527 GACTTGATAA 550536 | ||||| || Sbjct 17036509 GTCTTGACAA 17036518 >seq2 Length=31686972 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||||||||| | || ||||| || || || |||||| Sbjct 28811810 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 28811751 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 28811750 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 28811691 Query 550520 GCATATGGA 550528 | |||||| Sbjct 28811690 TCTTATGGA 28811682 >seq5 Length=24206129 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || || ||||||||||| |||||||||||| | ||| | Sbjct 10321773 AAGTCACAAAGGCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCGA 10321832 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | | ||||| || || || || || ||||||| Sbjct 10321833 CAAAAGATGCTGGCCGGATTGCTGGGTTGGAAGTTCTCCGCATCATAAACGAGCCTACTG 10321892 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | || | | |||||||| |||| || Sbjct 10321893 CAGCATCTTTGGCATATGGGTTTGAAAA 10321920 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || || ||||||||||| |||||||||||| | ||| | Sbjct 10336153 AAGTCACAAAGGCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCGA 10336212 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | | ||||| || || || || || ||||||| Sbjct 10336213 CAAAAGATGCTGGCCGGATTGCTGGGTTGGAAGTTCTCCGCATCATAAACGAGCCTACTG 10336272 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | || | | |||||||| |||| || Sbjct 10336273 CAGCATCTTTGGCATATGGGTTTGAAAA 10336300 >seq6 Length=25711811 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || || ||||| || ||||| ||| | ||| || |||||||| || || Sbjct 22964007 CCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAATCCGCGAGG 22964064 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||| || ||||| || || ||||| || || | |||||| ||||| ||||| Sbjct 22964065 GTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGAATG 22964124 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTC 563429 || || || || ||||| || || || ||||||||||||| | || | | || Sbjct 22964125 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATTGTATCAGAG-GACTCAACCTC 22964183 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | || || ||||| || || || || || || ||||| Sbjct 22964184 GAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 22964228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295365385880