Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq10 453 3e-123 >seq10 Length=19274048 Score = 453 bits (502), Expect = 3e-123 Identities = 684/970 (71%), Gaps = 17/970 (2%) Strand=Plus/Plus Query 25817 ACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTA 25876 || || || || |||||||| || | |||||||| || || | ||||| || |||| Sbjct 17610093 ACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTA 17610152 Query 25877 CTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGA 25935 | | || ||| | ||| ||||| | ||||||||||| || || || |||||||| || Sbjct 17610153 TTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGA 17610211 Query 25936 TGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGC 25995 ||| || |||||||| ||||| || || ||| | |||||||||||||| || || || | Sbjct 17610212 TGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTAC 17610271 Query 25996 AGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCAC 26055 | || || | ||| || ||||| | || |||||||| || |||||||||| | Sbjct 17610272 CATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATC 17610331 Query 26056 ACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAAT 26115 | || |||||| ||||||||||||| || ||| | || ||| | | ||||||||| | Sbjct 17610332 TGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACT 17610391 Query 26116 AGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACC 26175 || ||||| ||| || | |||||||||| || | | || || ||| | || Sbjct 17610392 TGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCC 17610451 Query 26176 ATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTA 26235 ||||| |||||||||| |||| || | | || ||| || || ||||| |||| Sbjct 17610452 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 17610511 Query 26236 TCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAA 26295 ||| | || ||||| ||||| |||||| |||||| | || || ||||||||||| || Sbjct 17610512 CCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAA 17610571 Query 26296 CTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGG 26355 ||||||| | |||||||| ||||| ||||| || || ||||| ||||| || ||| || Sbjct 17610572 CTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGG 17610631 Query 26356 TGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTC 26415 ||| ||||| || ||||| || | || ||| ||||||||| || | ||||| || || Sbjct 17610632 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTC 17610691 Query 26416 CTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCA 26475 | || ||||| || || | | || ||| | || || | ||||| || Sbjct 17610692 TAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCA 17610751 Query 26476 AGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCA 26535 ||| |||||||| ||||||||||| || || || || ||||| || || Sbjct 17610752 AGAGGAAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTTCCA 17610798 Query 26536 GTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGT 26595 ||||| |||||||| ||| |||||| | || ||||| | | | ||||||| || || Sbjct 17610799 ATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGT 17610858 Query 26596 TGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAA 26655 || || ||| | || || | ||||| | || ||||| || || ||||| || || || Sbjct 17610859 AGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAA 17610918 Query 26656 CTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGATGTAT 26714 || ||||| || ||||| ||| | || | | || || ||| ||||||||| | Sbjct 17610919 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCTGATATCA 17610977 Query 26715 TAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCAC 26774 | ||||| ||||| || || | ||||| |||||||| ||| ||||||| ||||| || | Sbjct 17610978 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTC 17611037 Query 26775 TTGACTTAGC 26784 | ||| |||| Sbjct 17611038 TAGACCTAGC 17611047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146726379091488