Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq10 502 7e-138 >seq10 Length=19274048 Score = 502 bits (556), Expect = 7e-138 Identities = 688/959 (72%), Gaps = 19/959 (2%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||||||| || ||||||||||| || | ||| || ||||| |||||||| || | | Sbjct 17611047 GCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAGATTA 17610988 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | || ||||||||||| | || | || | | |||||| || || Sbjct 17610987 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 17610928 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || ||||| || || ||||| ||||| ||||||||||| | || | ||| || | | Sbjct 17610927 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 17610868 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | || ||||||||| ||| |||||| |||||| || || ||||| Sbjct 17610867 CAAATCCCTACTACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 17610808 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 |||||||| |||||||| || |||||||| || ||||| ||||| ||| Sbjct 17610807 CTAGCATATTGGAAGAT-------------TAACCATGAGCGGCCACAATATTATAAGTC 17610761 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 36332 ||||| ||||| || ||| | || || | || |||||| |||| ||||| | Sbjct 17610760 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 17610701 Query 36333 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 36389 || || | |||| || |||| | || ||||||||| ||||| | || |||||| Sbjct 17610700 ATCAAACTAGAGGT--TACCAAG-CAACCATGCATAGCACTGAATAGGGAACCGCCGAAT 17610644 Query 36390 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 36449 || || || ||||| | ||| || || |||||||||||||| || || |||||||| || Sbjct 17610643 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAAT 17610584 Query 36450 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 36509 |||| |||||| |||||||| || || || || | ||||||||||||| ||||||| ||| Sbjct 17610583 ACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCT 17610524 Query 36510 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 36569 || |||| |||||| | ||||| |||||| || ||||||||||| |||||||| || Sbjct 17610523 TGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 17610464 Query 36570 ACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 36629 ||| ||||| || | |||||| || | |||| |||||||| | || |||| ||| Sbjct 17610463 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAA 17610404 Query 36630 GCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAAC 36689 | | ||||| | ||||| | ||||| || | ||| || || || || |||||| Sbjct 17610403 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 17610344 Query 36690 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGAT 36749 ||||| || | | |||||||||||| |||||||| ||||| | |||| || || Sbjct 17610343 CACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCAGAA 17610284 Query 36750 GATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 36809 | || || || | |||||||| || |||||||| || ||||| | || || |||||| Sbjct 17610283 GTAGGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGC 17610224 Query 36810 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 36869 |||||||||||||| ||||| || ||||| ||||| | || || || | |||| | | Sbjct 17610223 TCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAA 17610164 Query 36870 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 36928 ||| || || | | ||||||||| | || |||||||| || | || || ||||| Sbjct 17610163 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 17610105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150454378560248