Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq10 518 1e-142 seq2 104 7e-18 seq8 98.7 3e-16 >seq10 Length=19274048 Score = 518 bits (574), Expect = 1e-142 Identities = 699/972 (72%), Gaps = 21/972 (2%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 ||||| || || |||||||||||||||| |||||||||||||||||||||||||| || Sbjct 17611047 GCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAGATTA 17610988 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACT 5311 |||||||| | || ||| |||||||| || | | ||| |||| ||||| || Sbjct 17610987 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAACTACA 17610931 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || ||||| || || ||||| ||||| ||||||||||| || || | || || Sbjct 17610930 GATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTG 17610871 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| | ||| |||||| |||||| ||| |||||| Sbjct 17610870 AACCAAATCCCTACTACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTA 17610811 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || |||||||| |||||||| || |||||||| || ||||| ||||| Sbjct 17610810 AAACTAGCATATTGGAAGAT-------------TAACCATGAGCGGCCACAATATTATAA 17610764 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCA 5551 || ||||||||||| || ||| | || || | || ||| |||| ||||| Sbjct 17610763 GTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCC 17610704 Query 5552 CGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAAT 5611 | || | ||| || || | | |||||||||||| ||| | | || |||||| Sbjct 17610703 CTGATCAAACTAGAGGTTACCAAGCAACCATGCATAGCACTGAATAGGGAACCGCCGAAT 17610644 Query 5612 ACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAAT 5671 || ||||| ||||| | |||||| || |||||||||||||| || || |||||||||||| Sbjct 17610643 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAAT 17610584 Query 5672 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCC 5731 || | ||||||||| ||||||||||| || || | ||||||||||||| ||||||||| Sbjct 17610583 ACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCT 17610524 Query 5732 TGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGC 5790 || || | |||||| | || || || | ||||| | || ||||| || ||||||||||| Sbjct 17610523 TGACCAATAGGGTAAATCAAGAAAACAGCAGTAG-CAGCTGCAACAGGAGCTGAATATGC 17610465 Query 5791 TACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTA 5850 || |||||| || ||||| || | | | |||| |||||||| | || |||| || Sbjct 17610464 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATA 17610405 Query 5851 AGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAG 5910 | || | ||||| | |||||| | || | || | || || || |||||||| | Sbjct 17610404 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 17610345 Query 5911 CCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGA 5970 ||| ||||| | | || |||||||| || || || ||||| || || | || || Sbjct 17610344 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCAGA 17610285 Query 5971 GCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGG 6030 | || |||| || || || || || |||||||| || |||| ||| || | || || Sbjct 17610284 AGTAGGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGG 17610225 Query 6031 TTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGT 6090 ||||| || || || || || ||||| || ||||| | ||| || | |||||| ||| Sbjct 17610224 CTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA 17610165 Query 6091 AGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTT 6150 ||||||||| || | | || ||||| || ||||||||||| || | || || ||||| Sbjct 17610164 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 17610105 Query 6151 GTTGGTGCTAGT 6162 | ||||||||| Sbjct 17610104 TTCGGTGCTAGT 17610093 >seq2 Length=31686972 Score = 104 bits (114), Expect = 7e-18 Identities = 111/144 (77%), Gaps = 7/144 (5%) Strand=Plus/Plus Query 5212 GTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATC 5271 || ||||||||| ||||||||||||||||||||| |||| || |||||||| | || ||| Sbjct 14358804 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 14358863 Query 5272 TGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACTGACTGATTGAAGTTAAA 5328 |||||||| || | | ||| |||| ||||| || || || ||||| || || Sbjct 14358864 AGCCCAAGTATAAATAACGCGACCTTGGCTA---TCAACTACAGA-TGGTTGAAATTGAA 14358919 Query 5329 GCCGTTAAGATTAAAAGCCATAGT 5352 || || ||||| ||||||||||| Sbjct 14358920 CCCATTTAGATTGAAAGCCATAGT 14358943 >seq8 Length=22678724 Score = 98.7 bits (108), Expect = 3e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 21568354 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 21568413 Query 5251 GTTGGCACGGTTCAGGACATCTGC 5274 || ||| |||| | || ||| || Sbjct 21568414 ATTAGCATGGTTGATGATATCAGC 21568437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649578247432