Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq10 489 5e-134 >seq10 Length=19274048 Score = 489 bits (542), Expect = 5e-134 Identities = 685/959 (71%), Gaps = 19/959 (2%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || | ||| || ||||| |||||||| || | | Sbjct 17611047 GCTAGGTCTAGAGGGAAGTTGTGAGCATAACGTTCGTGCATTACTTCCATACCAAGATTA 17610988 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | | |||||| || || Sbjct 17610987 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 17610928 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| ||||| ||||||||||| | || | ||| || | | Sbjct 17610927 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 17610868 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||| ||| |||||| |||||| ||| || ||||| Sbjct 17610867 CAAATCCCTACTACAGGCCAAGCATCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 17610808 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| || |||||||| || ||||| ||||| ||| Sbjct 17610807 CTAGCATATTGGAAGAT-------------TAACCATGAGCGGCCACAATATTATAAGTC 17610761 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || |||||| |||| ||||| | Sbjct 17610760 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 17610701 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| | || ||||||||| ||||| | || |||||| Sbjct 17610700 ATCAAACTAGAGGT--TACCAAG-CAACCATGCATAGCACTGAATAGGGAACCGCCGAAT 17610644 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || ||||| | ||| || || |||||||||||||| || || |||||||| || Sbjct 17610643 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAAT 17610584 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| |||||| |||||||| || || || || | ||||||||||||| ||||||| ||| Sbjct 17610583 ACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCT 17610524 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || |||| |||||| | ||||| |||||| || ||||||||||| |||||||| || Sbjct 17610523 TGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 17610464 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| ||||| || | ||| || || | |||| |||||||| | || |||| ||| Sbjct 17610463 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAA 17610404 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 | | || | | ||||| | ||||| || | ||| || || || || || ||| Sbjct 17610403 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 17610344 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 ||||| || | | |||||||||||| |||||||| ||||| | |||| || ||| Sbjct 17610343 CACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGACCGCAGCAGAA 17610284 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || || || | || ||||| || |||||||| || ||||| | || || |||||| Sbjct 17610283 GTAGGAACAATGGTACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGC 17610224 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 |||||||||||||| ||||| || ||||| ||||| | || || || | |||| | | Sbjct 17610223 TCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAA 17610164 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 26408 ||| || || | | ||||||||| | || |||||||| || | || || ||||| Sbjct 17610163 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 17610105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151993578340912