Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 >seq5 Length=24206129 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || || || || || |||||| | || | || | | |||| || | ||||| || Sbjct 7376469 GGTGGACTCCTTCTGGATGTTGTAACCTGCTAAGGTGCGGCCATCCTCGAGCTGCTTGCC 7376528 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 ||||| |||| ||||| ||||| || |||||||| || || || ||||| ||| ||| Sbjct 7376529 AGCAAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGCTTT 7376588 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 || | || | ||||| |||| || || || | || | ||||||||||| || || Sbjct 7376589 CACGTTGTCAATTGTGTCCGACGACTCAACCTCCAAGGTAATGGTTTTGCCGGTCAATGT 7376648 Query 101452 TTTTACAAATATCTGCAT 101469 || ||||| || ||||| Sbjct 7376649 CTTGACAAAGATTTGCAT 7376666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278342044284