Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq10 526 2e-144 seq2 107 2e-18 seq8 86.0 7e-12 >seq10 Length=19274048 Score = 526 bits (582), Expect = 2e-144 Identities = 687/951 (72%), Gaps = 25/951 (3%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || || Sbjct 17610120 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATC 17610179 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || ||||| || || |||||||| ||||| |||||||| | || |||||| | ||||| Sbjct 17610180 GCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCT 17610239 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 | || || || ||||| || ||||||||| | | ||||||| ||| ||| | || Sbjct 17610240 TTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTACTTCTGCTGCGGTCGGA 17610299 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| || || || |||||||| ||| || ||||||||||||| || ||||| || Sbjct 17610300 TTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGT 17610359 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGT 162837 |||| | || | || | |||||| | | || | ||| | | | |||||| Sbjct 17610360 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGT 17610416 Query 162838 CAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 162897 |||||||||| || ||| | ||||||||||||||||| ||||||||| || || Sbjct 17610417 GAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 17610476 Query 162898 CCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 162957 || || | || || ||||| |||||| | || ||| | |||||||| ||||| | Sbjct 17610477 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTTT 17610536 Query 162958 GACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAG 163017 || | |||||| | || || ||||||||||| |||| ||| | || ||||| |||||| Sbjct 17610537 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 17610596 Query 163018 CACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCA 163077 || |||||||| ||||| || || || ||| | || || || ||||||||||| ||||| Sbjct 17610597 CATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 17610656 Query 163078 CTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAG 163137 || || ||||||||||| |||| | || || ||| | | ||||| ||||| ||||| Sbjct 17610657 CTATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAA 17610716 Query 163138 CAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT 163197 | || || || | ||||| | || || ||||| ||||||||||| || ||||| Sbjct 17610717 AACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTG 17610776 Query 163198 GCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGT 163257 || |||||||| || |||||||| ||||| ||| |||||||| ||| Sbjct 17610777 GCCGCTCATGG-------------TTAATCTTCCAATATGCTAGTTTTAACAACTCTCGT 17610823 Query 163258 TCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGT 163317 || | ||||||||| | | ||| | ||||| || | || ||||||||||| | ||| Sbjct 17610824 TCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGT 17610883 Query 163318 GTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---C 163374 | |||||||| ||||| || ||||| ||||| ||||||||||| || ||||| | Sbjct 17610884 ATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGC 17610943 Query 163375 GCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATG 163434 |||| | || ||| ||||||||| |||||| | ||| | || ||||||||| Sbjct 17610944 CAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATG 17611000 Query 163435 GAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||| |||||||| ||| |||||||||||||||| || ||||| ||| || Sbjct 17611001 GAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGCTACT 17611051 >seq2 Length=31686972 Score = 107 bits (118), Expect = 2e-18 Identities = 129/171 (75%), Gaps = 7/171 (4%) Strand=Plus/Minus Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 || ||||||||||| | ||| | |||||||| ||||| || || || ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 163357 AACCAATCCGTCGTTGAC-GC--AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTT 163413 ||||| || || ||||| || |||| | || ||| ||||||||| |||||| | Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGC---GTTATTTATACTTGGGCTGATATCATC 14358855 Query 163414 AACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 163464 ||| | ||| |||| ||||||||| |||||||| |||||||||||| || Sbjct 14358854 AACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 >seq8 Length=22678724 Score = 86.0 bits (94), Expect = 7e-12 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 163426 CTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 21568413 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 21568354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553084717037280