Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq10 470 2e-127 seq2 84.2 2e-11 >seq10 Length=19274048 Score = 470 bits (520), Expect = 2e-127 Identities = 689/975 (71%), Gaps = 15/975 (2%) Strand=Plus/Plus Query 162905 TAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTC 162964 ||||| ||| | ||||| || || | || ||||| || || ||||||| || || Sbjct 17610091 TAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCT 17610150 Query 162965 TGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATT 163023 | ||| | |||||| ||||| || || |||||||| ||||||| || || || || ||| Sbjct 17610151 TATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATT 17610209 Query 163024 GACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGT 163083 || || || |||||||| || ||||||| | | || || ||||| || ||||||||| Sbjct 17610210 GATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGT 17610269 Query 163084 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 163143 | ||||||| |||| || | || | ||||| || || || |||||||| ||| Sbjct 17610270 ACCATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 17610329 Query 163144 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTT 163203 || ||||||||||| | || || || ||||||| | || | || | |||||| | Sbjct 17610330 TCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 17610389 Query 163204 ATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGC 163263 | || | | |||||||| ||||| |||||||| | || | |||||||| Sbjct 17610390 CTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGT 17610449 Query 163264 CCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTC 163323 || ||||| ||| ||||| || || ||||||||||| || | || || ||| || | Sbjct 17610450 CCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATT 17610509 Query 163324 TATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTC 163383 || ||| | |||||||| ||||| ||| | ||||| | || || ||||| || ||| Sbjct 17610510 TACCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTC 17610569 Query 163384 AACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTG 163443 |||| ||| |||| ||||| |||||||| |||||||| ||||| || || || ||||| Sbjct 17610570 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 17610629 Query 163444 GGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACC 163503 || || |||||||| ||||| || || || ||| || |||||||| | | || ||| Sbjct 17610630 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACC 17610689 Query 163504 TCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGT 163563 ||| | || | || || ||||||| || || || | ||||||| |||||| Sbjct 17610690 TCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGT 17610749 Query 163564 CAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTC 163623 ||||| |||||||| || || || || || || ||||| || |||||| Sbjct 17610750 CAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGG-------------TTAATCTTC 17610796 Query 163624 CAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTC 163683 |||||||| || |||||| | | | ||||||||| ||| || |||||||| Sbjct 17610797 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTA 17610856 Query 163684 GTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTC 163743 || || || ||||| ||||| | || | || || ||||| ||||| || ||||| ||| Sbjct 17610857 GTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTC 17610916 Query 163744 AACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTG 163803 || |||||||| || | ||||| | || ||||| || | || |||||||| || | Sbjct 17610917 AATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATC 17610976 Query 163804 CTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCA 163863 | ||||| ||| ||| ||||||||||| ||||| || ||| | || ||||||||||| Sbjct 17610977 ATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCT 17611036 Query 163864 CTCGATCTTGCTGCT 163878 || || || ||| || Sbjct 17611037 CTAGACCTAGCTACT 17611051 >seq2 Length=31686972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 165090 GCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCC 165149 ||||| || ||| ||||| | | ||| | |||||||| || || ||||| | ||||| Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 165150 TTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGA 165209 || ||||||||||| ||||| || | || || | || |||||| ||||||||||| Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGG 31659825 Query 165210 GTCACAGTTGAAAA 165223 | || || ||||| Sbjct 31659826 GCAACCGTGGAAAA 31659839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563209515518560