Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 255 1e-62 >seq6 Length=25711811 Score = 255 bits (282), Expect = 1e-62 Identities = 585/871 (67%), Gaps = 35/871 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 7420497 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 7420556 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCA-- 47954 ||| || ||||||||||| ||| |||| | | || ||| || | || ||| Sbjct 7420557 CATCCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTG-CAG-CCGA---GTGCCATG 7420611 Query 47955 -GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | ||| | || |||||| | |||||||| | ||||||| | ||||||||| | | Sbjct 7420612 AGGAGGCGGTCGGCGACGAATTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACG 7420671 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || | ||||| | || | || |||||| |||| || | ||||| || | || Sbjct 7420672 AGCGCGACGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACG 7420731 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| ||||| | ||| | | ||| ||| ||| | | | ||||| | |||| Sbjct 7420732 ATCTCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCAG 7420788 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || Sbjct 7420789 GCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCC 7420848 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| ||||| || ||||||||||| || || ||| ||||| ||||||||||| Sbjct 7420849 GGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATC 7420908 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-AGAT 48312 ||||| || ||||| ||| ||| | ||| | |||||| || | | ||| Sbjct 7420909 CCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCGCCACCGTCGAT 7420964 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCC 48368 |||| | |||||||| ||||| | ||| ||| | || || ||||| | Sbjct 7420965 CCAGCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCCGGGACGGTGTCGATGGCGC 7421020 Query 48369 GGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGT 48425 |||| ||| | ||| ||| | |||| | ||||| ||||||| | || Sbjct 7421021 GGAACAGCCGGTCCTT---CTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGT 7421077 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 ||||||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| Sbjct 7421078 ACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGG 7421137 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 |||||||| || | ||| || || ||||| || || || || || | Sbjct 7421138 CGACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGG 7421197 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCAT 48602 | || |||||||| || || || | ||| |||||||||| | ||| || || | Sbjct 7421198 CGGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGACAGCGCGGCGT 7421257 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | |||| | |||||||| || ||| | |||||||| ||||| | | Sbjct 7421258 CCCAGTGGCGCGCGTCGGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACGCCACCG 7421317 Query 48663 CTTTTTTGTACATGCCCCATATGTCCGGATA 48693 | || ||||| | |||| || | ||| || Sbjct 7421318 CCTTCTTGTAGAACTCCCAGATCTGCGGGTA 7421348 Score = 156 bits (172), Expect = 8e-33 Identities = 283/410 (69%), Gaps = 7/410 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 1225614 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 1225555 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | || || || | | ||| Sbjct 1225554 CATCCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTG-CAC-CCGAGCGCCATGAGC 1225497 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || | || |||||| |||||||||| | |||||| | |||||| || | ||| Sbjct 1225496 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 1225437 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || |||||| |||| || | |||||| || | || ||| Sbjct 1225436 GCGACGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATC 1225377 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | || ||||| ||||| | | ||| ||| ||| | | | ||||| | |||||| Sbjct 1225376 TCCTGGACGCGTGACTCGTCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCAGGCG 1225320 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | || ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 1225319 AAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 1225260 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 |||| || | || ||||||||||| || || ||| || || ||||| Sbjct 1225259 ATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAA 1225210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532660270080