Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 185 2e-41 >seq6 Length=25711811 Score = 185 bits (204), Expect = 2e-41 Identities = 566/860 (66%), Gaps = 33/860 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| || || ||| | || || Sbjct 7421339 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTC 7421280 Query 25537 GCCAAGGACATGGACGGCTGGTA---CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| | ||| || ||| ||||||| || || || Sbjct 7421279 TCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCCCCGACGAGCGCCACTTCATCTCC 7421220 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | || Sbjct 7421219 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 7421160 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||| |||||||| |||||||| |||||| Sbjct 7421159 TTCATGTCCGACGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATC 7421100 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||| || ||| ||||| |||| |||| Sbjct 7421099 GAGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCC 7421040 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAG-CATCAAGAGGAAGGCGCG 25832 |||| || |||||||| | |||||||| ||| ||| | | | | ||||| Sbjct 7421039 GAGAAGGACCGGCTGTTCCGCGCCATCGA-CACCGTCCCGGCCGTGCGCCGCAAGGCCGA 7420981 Query 25833 GTGGGCCATGAAGTGGATCAACAG-CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||||| |||||| || | |||||| || | |||||| || || |||| Sbjct 7420980 CTGGGCCATGCGCTGGATCGACGGTGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCT 7420925 Query 25892 TTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | | |||| || ||||| ||||| ||| || || || ||| ||||||||||||||||| Sbjct 7420924 TCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGC-GCCATCTTCTGGCTCAA 7420867 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || |||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 7420866 GAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 7420807 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 || ||| | || || |||||||| |||||| | || | | | | ||| | || | Sbjct 7420806 CCTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGCAAGC--TC-GA 7420753 Query 26070 AGAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 ||| | |||| | ||| || || || || || ||||||| |||||| Sbjct 7420752 CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTG 7420693 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||||||| ||||| || Sbjct 7420692 CGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGA 7420633 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACG 26241 | || ||||||| || || || || || || || || ||| | |||| || || Sbjct 7420632 ATTCGTCGCCGACCGCCTCCTCATGGCA-CTCGG-CT-GCAAGAAGATGTACAACGT-CG 7420577 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 || ||||| ||||||| ||||| ||| || || | || |||||||||||||| || Sbjct 7420576 CC-AACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAG 7420518 Query 26302 AAGAGGGTCGGCGACTATCA 26321 ||| | ||||||||||| || Sbjct 7420517 AAGCGCGTCGGCGACTACCA 7420498 Score = 122 bits (134), Expect = 2e-22 Identities = 277/409 (68%), Gaps = 19/409 (5%) Strand=Plus/Plus Query 25921 GGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACT 25978 ||||| || |||| ||||||||||||||||| || | |||| |||||| || || || Sbjct 1225216 GGTTCATTCTGCG-CCATCTTCTGGCTCAAGAAG-CGCGGACTCATGCCGGGCCTCACCT 1225273 Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 | ||||||||||||||| | | ||||||||||||||| | || || |||||||| |||| Sbjct 1225274 TCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCT 1225333 Query 26039 ACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGAC-CGTCTACAGTATCATCAAAGAG 26097 || | || | | | | | || || | || || |||| | ||| || || Sbjct 1225334 AC---GACCTCCTCCGCGGC-AAGCTCGACGAGTCACGCGTCCAGGAGATCGTCGCCGAC 1225389 Query 26098 GCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATG 26157 || ||||| ||||||| |||||| | || ||| Sbjct 1225390 GCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATG 1225449 Query 26158 AACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCT 26216 ||| | ||||||||||| ||||| |||| || ||||||| ||||| || | ||| Sbjct 1225450 AACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGC-GCT 1225508 Query 26217 GGGACTCGCCAGA--CTCTACA--GTACGCCTAACCCGTTCGACTTTATGGAAAACATAT 26272 || || ||| | |||| || |||| ||||||||||||| ||||| ||| | Sbjct 1225509 CGG--GTGCAAGAAGATGTACAACGT-CGCC-AACCCGTTCGACTGGATGGAGCTCATCT 1225564 Query 26273 CGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | || | || |||||||||||||| || ||| | ||||||||||| || Sbjct 1225565 CCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 1225613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844660673280