Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq10 549 2e-151 seq2 100 3e-16 >seq10 Length=19274048 Score = 549 bits (608), Expect = 2e-151 Identities = 687/942 (73%), Gaps = 15/942 (2%) Strand=Plus/Plus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || |||||||| ||| | |||||||| ||| || ||| |||| || | || |||| Sbjct 17610120 GGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACCGCAACTTCTGTATTTATTAT 17610178 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 ||| ||| | ||||| ||||| || || || || || || || || || ||| |||| || Sbjct 17610179 CGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 17610238 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 | | | ||||| ||||| || ||||||||| | ||||||| | ||| || | || Sbjct 17610239 TTTACTTTACGGAAACAATATTATCTCTGGTACCATTGTTCCTACTTCTGCTGCGGTCGG 17610298 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | ||||| ||||| || |||||||| || ||| ||||||||||| | ||||| || || Sbjct 17610299 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGG 17610358 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 |||||| |||| | ||| | |||||| | ||||| || | ||||||||||||||| Sbjct 17610359 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 17610418 Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648 |||||||| || ||| || || |||||||||||||| ||||||||| || ||||| Sbjct 17610419 GTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 17610478 Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA 8708 |||||| |||||| ||||||| ||| | | || ||| |||||||||| |||| ||| Sbjct 17610479 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTTTGA 17610538 Query 8709 TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCA 8768 |||||||||| | || || || ||||| ||||||| |||| |||| |||||||| ||||| Sbjct 17610539 TGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCA 17610598 Query 8769 CAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCT 8828 |||||||| ||||| || || |||||| | ||||| |||||||| |||||||| || || Sbjct 17610599 TAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCT 17610658 Query 8829 CTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAC 8888 || || |||||||||| | || || ||| || | | || ||||| |||| Sbjct 17610659 ATTCAGTGCTATGCATGGTTGCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 17610718 Query 8889 CGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGC 8948 ||| ||| || | || |||| || |||||||| || || ||||| || ||||| || Sbjct 17610719 CGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGC 17610778 Query 8949 CGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAG 9008 ||||||||| || |||||||||||||| ||||||||| ||| | Sbjct 17610779 CGCTCATGG-------------TTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTC 17610825 Query 9009 CTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGT 9068 || || |||||| | | ||| |||||||| || || || ||||| || || | || | Sbjct 17610826 TTTACACTTCTTCTTGGATGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTAT 17610885 Query 9069 CTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACA 9128 || ||||||||||| || || || ||||| |||||||| || | | || | || Sbjct 17610886 TAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCA 17610945 Query 9129 AGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGT 9188 ||| || || | || || ||||| || | | ||||| || || ||||||||||| Sbjct 17610946 AGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGT 17611005 Query 9189 CATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGC 9230 ||||||||| | | || ||||||||||| || ||||| || Sbjct 17611006 AATGCACGAACGTTATGCTCACAACTTCCCTCTAGACCTAGC 17611047 >seq2 Length=31686972 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 10290 TCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGC 10349 || || | || ||||| || || ||| | |||||| |||| || ||||||||||||||| Sbjct 31659698 TCTGCATAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGT 31659757 Query 10350 TCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAA 10409 | || || || |||||||||||||||||||| || | || | ||| || |||| || | Sbjct 31659758 TGAACCCATTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTA 31659817 Query 10410 TCCACGGAGTCACTGTAGAAAAC 10432 | || || | || || |||||| Sbjct 31659818 TTCATGGGGCAACCGTGGAAAAC 31659840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516479922528000