Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 134 9e-26 seq12 104 2e-16 seq4 104 2e-16 seq2 96.9 2e-14 seq5 95.1 8e-14 seq11 86.0 4e-11 >seq3 Length=33311619 Score = 134 bits (148), Expect = 9e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| ||||| || |||||||| || | || ||||||||||||| Sbjct 31523335 ATGCTGTTGTCACTGTTCCTGCATACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 31523394 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| |||||||||||| | ||||| || ||||| |||||||| || ||| Sbjct 31523395 CAGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCAACAGCTGCTGCAA 31523454 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 31523455 TTGCTTATGGTCTTGACAAGAA 31523476 Score = 91.5 bits (100), Expect = 1e-12 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 ||||| |||| ||||| | || || || || |||||| || || | | || Sbjct 644302 GTTTTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGAAAATCTGTTTCCAAGGCT 644243 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || |||||||||||||| ||||| |||||| |||| ||||| || || || ||||| || Sbjct 644242 GTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGT 644183 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | || || || ||| |||| | | || || |||||||| || || || || || || Sbjct 644182 CGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTGTCT 644123 Query 474860 TATGG 474864 ||||| Sbjct 644122 TATGG 644118 >seq12 Length=20550741 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||| ||||| || ||||| || || | |||||| |||||||| Sbjct 6137644 GCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAACAAAAGATGCT 6137703 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 ||| | |||||||| | | ||| | || ||||| |||||||| || || || | ||| Sbjct 6137704 GGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAACCGACTGCTGCATCCCTT 6137763 Query 474857 GCTTATGGTCTTGATAAGAA 474876 ||||||||| |||| ||||| Sbjct 6137764 GCTTATGGTTTTGAGAAGAA 6137783 Score = 93.3 bits (102), Expect = 3e-13 Identities = 208/308 (68%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATT-ATGAC 475935 || ||| |||| || |||||| | || | ||||| || || ||||| ||| | ||||| Sbjct 6140338 GTTCTTCTTGATGTTACTCCATTGTCTCTTGGTCTGGAGAC-GTTGGGTGGAGTGATGAC 6140396 Query 475936 TAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTA 475995 || ||||| |||||| || | | || | ||||||| | ||||| ||||| Sbjct 6140397 CAAGATTATTCCCAGAAACACAACACTGCCCACCTCAAAATCAGAGGTATTCTCCACAGC 6140456 Query 475996 TTCTGATAATCAAACAACTGTAACCATCCAAATCTT--TGAAGGTGAAAGAAAATTCACT 476053 | | ||| || |||| ||| || |||| || | | || || ||| | || Sbjct 6140457 TGCAGATGGACAGACAAGTGTTGAGAT--AAATGTTCTTCAGGGAGAGAGAGAGTTTGTC 6140514 Query 476054 AAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGA 476113 || || || ||||||| || | || || || |||||||| || | || Sbjct 6140515 CGGGACAACAAGTCTCTTGGAAGCTTCCGCTTGGATGGAATCCCTCCTGCACCACGTGGT 6140574 Query 476114 GTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| ||||||||||| | |||||||||||||| ||||||||||| |||| ||||| Sbjct 6140575 GTTCCACAAATTGAAGTCAAGTTTGATATTGATGCCAATGGTATTCTCTCTGTTGCTGCT 6140634 Query 476174 TGTGATAA 476181 |||||| Sbjct 6140635 ATTGATAA 6140642 >seq4 Length=27574323 Score = 104 bits (114), Expect = 2e-16 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| ||||| ||||| || | ||| ||| | | || |||||||| || ||| Sbjct 24792413 ACGAAGGCGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATG--TTATAATCCGCGAGA 24792356 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | ||| ||||| ||||| ||||| || ||||| ||||| || || ||||| || Sbjct 24792355 GTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGAGGGATG 24792296 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTC 480727 || |||||||| |||||||| || ||| ||||| ||||| | | | || | | Sbjct 24792295 CCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCC 24792236 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| | || || || || ||||| ||||||||||| || || Sbjct 24792235 AAGG-TGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTG 24792195 >seq2 Length=31686972 Score = 96.9 bits (106), Expect = 2e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || ||||| |||||||| |||||||||||| |||| ||||| ||||| || ||||| Sbjct 28811810 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 28811751 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| |||| | || || ||||||||||| || || || || Sbjct 28811750 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 28811691 Query 474857 GCTTATGG 474864 ||||||| Sbjct 28811690 TCTTATGG 28811683 >seq5 Length=24206129 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| ||||| ||||| || || || | || || ||||| || || || Sbjct 19880826 AGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTA 19880767 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| |||||||| || ||||| || || || || ||||| || ||| Sbjct 19880766 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCC 19880707 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 ||||| || |||||| || || ||||||||||||| | | || |||||||| Sbjct 19880706 TTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAA-CCTCAAGGGT 19880648 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || | ||||| || || ||||| Sbjct 19880647 GATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTG 19880612 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || ||||| ||||| || || || ||| || | || || ||||| || || Sbjct 19880601 CGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTG 19880542 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| || ||||| ||||| || || ||||| || || || || || ||||| Sbjct 19880541 CGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCC 19880482 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || ||||| || ||| ||||| ||||| | | | |||||| Sbjct 19880481 TCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATGGTATCCGAGGACTCAACCTCAAGG 19880422 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||||||||| || || || || Sbjct 19880421 GTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTG 19880384 >seq11 Length=23014695 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || || ||||| || || | || || || || |||| Sbjct 22829097 ATGCTGTTGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 22829156 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||| ||||| | || || || || || ||||| || || || Sbjct 22829157 CTGGAGTGATTGCTGGTCTCAATGTCATGCGCATCATCAACGAGCCAACTGCTGCAGCTA 22829216 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 22829217 TTGCCTATGGTCTTGACAAGAA 22829238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178685261776