Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20barthii_20[genbank_20GCA_5F000182155.3_202014-05-08] 12 sequences; 308,272,304 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq10 587 8e-163 seq2 120 3e-22 seq8 93.3 5e-14 seq4 86.0 7e-12 >seq10 Length=19274048 Score = 587 bits (650), Expect = 8e-163 Identities = 714/973 (73%), Gaps = 15/973 (2%) Strand=Plus/Plus Query 160891 ACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCCTGCTTG 160950 || |||||||| ||||| ||||| |||| ||||| || || ||||||| || ||| Sbjct 17610093 ACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTA 17610152 Query 160951 CTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGA 161009 | | || || | ||| || || || |||||| | | ||| || || || || || || Sbjct 17610153 TTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGA 17610211 Query 161010 CGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGC 161069 || |||||||| || || ||||||| | | || |||||||| || ||||||||| | Sbjct 17610212 TGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTAC 17610271 Query 161070 TGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAG 161129 || | ||| ||||| || |||| ||||||| ||||| || |||||||| ||| Sbjct 17610272 CATTGTTCCTACTTCTGCTGCGGTCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATC 17610331 Query 161130 TCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGAT 161189 | | || || ||| | ||||| || ||||||| | || |||| | |||||| | | Sbjct 17610332 TGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACT 17610391 Query 161190 TGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCC 161249 ||| | | ||| |||||||||||||||||||| || ||||||||| |||||||| Sbjct 17610392 TGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCC 17610451 Query 161250 TTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTA 161309 ||||||| || ||||| || |||||||| || || || | ||| || ||| || | || Sbjct 17610452 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 17610511 Query 161310 TCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAA 161369 ||| | |||||||| ||||| ||||| |||||| | || || |||||||| ||||| Sbjct 17610512 CCCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAA 17610571 Query 161370 CTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGG 161429 || ||| |||| ||||| |||||||| ||||| || ||||| || || || ||| | || Sbjct 17610572 CTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGG 17610631 Query 161430 CGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTC 161489 ||||| ||||| || |||||||| || |||||||| ||||| |||| |||| ||||| Sbjct 17610632 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTGCTTGGTAACCTC 17610691 Query 161490 TTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCA 161549 | || | | |||||||| |||||||| || || | ||||||| || ||||| Sbjct 17610692 TAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCA 17610751 Query 161550 AGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCA 161609 ||| |||||||| || || || || || || || || || || ||||| Sbjct 17610752 AGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTA-------------ATCTTCCA 17610798 Query 161610 ATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGT 161669 ||| ||| || |||||||| || || | ||||||||| | | |||||||||||| || Sbjct 17610799 ATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGATGCTTGGCCTGTAGT 17610858 Query 161670 TGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAA 161729 || || ||||||||||| | || | || || ||||| ||||| || || || ||||| Sbjct 17610859 AGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAA 17610918 Query 161730 CTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCT 161789 |||||||| ||| | |||||||| || ||| ||||| || || ||||| || | | Sbjct 17610919 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 17610978 Query 161790 CAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCT 161849 |||||||||| |||||| |||||||| |||||||| || ||||||||||||||||||| Sbjct 17610979 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTTATGCTCACAACTTCCCTCT 17611038 Query 161850 TGACCTTGCTGCT 161862 ||||| ||| || Sbjct 17611039 AGACCTAGCTACT 17611051 >seq2 Length=31686972 Score = 120 bits (132), Expect = 3e-22 Identities = 128/168 (76%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 161674 ATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTC 161733 || ||||||||||| | || | || || ||||| ||||| || ||||| ||||| ||| Sbjct 14358970 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14358911 Query 161734 AACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAAC 161793 ||||| ||| | |||||||| || ||| ||||| | || ||||| || | ||||| Sbjct 14358910 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14358852 Query 161794 CGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAAC 161841 ||||| ||||| |||||||| |||||||| || ||||||||| || Sbjct 14358851 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14358804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 162600 GCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCT 162659 ||||| || || |||||| | |||||| ||||||| || ||||| |||||| | || || Sbjct 31659706 GCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 31659765 Query 162660 TTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGA 162719 ||||| |||||||| || || || | | || | || |||| | ||||||||||| Sbjct 31659766 TTTCATATGATGGGAGTTGCTGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGG 31659825 Query 162720 GTGACAGTTGAAAA 162733 | || || ||||| Sbjct 31659826 GCAACCGTGGAAAA 31659839 >seq8 Length=22678724 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 161789 TCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTC 161848 |||||| |||| |||||| |||||||| |||||||| || ||||||||||||||||||| Sbjct 21568427 TCAACCATGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 21568368 Query 161849 TTGACCTTGCTGCT 161862 | ||||| |||||| Sbjct 21568367 TAGACCTAGCTGCT 21568354 >seq4 Length=27574323 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||||| ||||| || |||||||| || ||||| || ||||||||||| || ||| Sbjct 14073373 TACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGC 14073432 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | || || || || ||||| ||| ||| ||||| |||||||| Sbjct 14073433 GCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCG 14073492 Query 158461 TTCCTGGACGATGACCA 158477 ||||| ||||| | ||| Sbjct 14073493 TTCCTCGACGACGCCCA 14073509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547747117837920